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AT5G43130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TBP-associated factor 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TBP-associated factor 4 (TAF4); FUNCTIONS IN: transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID component TAF4 (InterPro:IPR007900), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: TBP-associated factor 4B (TAIR:AT1G27720.1); Has 4202 Blast hits to 2039 proteins in 267 species: Archae - 5; Bacteria - 117; Metazoa - 912; Fungi - 374; Plants - 141; Viruses - 12; Other Eukaryotes - 2641 (source: NCBI BLink).
Protein Annotations
BioGrid:19580eggNOG:ENOG410XQS6eggNOG:KOG2341EMBL:AB008267EMBL:AK229454EMBL:AY457044EMBL:CP002688
EnsemblPlants:AT5G43130EnsemblPlants:AT5G43130.1EnsemblPlants:AT5G43130.2entrez:834330ExpressionAtlas:F4K4L7Gene3D:1.10.20.10GeneID:834330
Genevisible:F4K4L7GO:GO:0005669GO:GO:0006352GO:GO:0006355hmmpanther:PTHR15138hmmpanther:PTHR15138:SF14HOGENOM:HOG000083172
InParanoid:F4K4L7IntAct:F4K4L7InterPro:IPR007900InterPro:IPR009072InterPro:IPR022003KEGG:ath:AT5G43130KO:K03129
OMA:SKSTLMYPaxDb:F4K4L7Pfam:PF05236Pfam:PF12174PRIDE:F4K4L7PRO:PR:F4K4L7ProteinModelPortal:F4K4L7
Proteomes:UP000006548RefSeq:NP_001190458.1RefSeq:NP_199127.3SMR:F4K4L7STRING:3702.AT5G43130.2TAIR:AT5G43130tair10-symbols:TAF4
tair10-symbols:TAF4BUniGene:At.30136UniProt:Q6SJR0UniProt:Q9FMH0
Coordinates (TAIR10) chr5:-:17315608..17321144
Molecular Weight (calculated) 90494.10 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.95
Length 823 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)