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AT5G42980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : thioredoxin 3
Curator
Summary (TAIR10)
encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.
Computational
Description (TAIR10)
thioredoxin 3 (TRX3); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: response to hydrogen peroxide, defense response to fungus, response to microbial phytotoxin; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin H-type 5 (TAIR:AT1G45145.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19563eggNOG:COG0526eggNOG:KOG0907EMBL:AB008264EMBL:AY059870EMBL:AY065098EMBL:AY085117
EMBL:AY093318EMBL:AY114566EMBL:CP002688EMBL:U35640EMBL:Z35335EMBL:Z35474EnsemblPlants:AT5G42980
EnsemblPlants:AT5G42980.1entrez:834313Gene3D:3.40.30.10GeneID:834313Genevisible:Q42403GO:GO:0000103GO:GO:0005618
GO:GO:0005739GO:GO:0005773GO:GO:0005794GO:GO:0005829GO:GO:0005886GO:GO:0006457GO:GO:0006662
GO:GO:0009408GO:GO:0009506GO:GO:0009507GO:GO:0009570GO:GO:0009735GO:GO:0010188GO:GO:0010286
GO:GO:0015035GO:GO:0016020GO:GO:0016671GO:GO:0034599GO:GO:0045454GO:GO:0050832GO:GO:0051259
Gramene:AT5G42980.1hmmpanther:PTHR10438hmmpanther:PTHR10438:SF265HOGENOM:HOG000292977InParanoid:Q42403IntAct:Q42403InterPro:IPR005746
InterPro:IPR012336InterPro:IPR013766InterPro:IPR017937KEGG:ath:AT5G42980KO:K03671OMA:VVFFKVDPANTHER:PTHR10438
PaxDb:Q42403Pfam:PF00085Pfam:Q42403Pfscan:PS51352PhylomeDB:Q42403PIR:S58118PRIDE:Q42403
PRO:PR:Q42403PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:Q42403Proteomes:UP000006548RefSeq:NP_199112.1scanprosite:PS00194
SMR:Q42403STRING:3702.AT5G42980.1SUPFAM:SSF52833SwissPalm:Q42403TAIR:AT5G42980tair10-symbols:ATH3tair10-symbols:ATTRX3
tair10-symbols:ATTRXH3tair10-symbols:TRX3tair10-symbols:TRXH3UniGene:At.24175UniProt:Q42403
Coordinates (TAIR10) chr5:+:17242772..17243718
Molecular Weight (calculated) 13109.90 Da
IEP (calculated) 4.80
GRAVY (calculated) 0.16
Length 118 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAEGEVIAC HTVEDWTEKL KAANESKKLI VIDFTATWCP PCRFIAPVFA DLAKKHLDVV FFKVDVDELN TVAEEFKVQA MPTFIFMKEG EIKETVVGAA
101: KEEIIANLEK HKTVVAAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)