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AT5G42970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Proteasome component (PCI) domain protein
Curator
Summary (TAIR10)
encodes subunit 4 of COP9 signalosome complex. sequence is similar to a subunit of the 19S regulatory particle of the 26S proteasome. recessive mutation causes derepression of photomorphogenesis.
Computational
Description (TAIR10)
CONSTITUTIVE PHOTOMORPHOGENIC 8 (COP8); FUNCTIONS IN: protein binding; INVOLVED IN: cullin deneddylation, negative regulation of photomorphogenesis, G2 phase of mitotic cell cycle, photomorphogenesis; LOCATED IN: signalosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase subunit 5B (TAIR:AT5G64760.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPDEeggNOG:KOG1497EMBL:BT025548EnsemblPlants:AT5G42970EnsemblPlants:AT5G42970.1entrez:834312ExpressionAtlas:Q1H5B6
Gene3D:1.10.10.10GeneID:834312Gramene:AT5G42970.1hmmpanther:PTHR10855hmmpanther:PTHR10855:SF2InterPro:IPR000717InterPro:IPR011991
KEGG:ath:AT5G42970KO:K12178OMA:MIVARHPPaxDb:Q1H5B6Pfam:PF01399Pfam:Q8L5U0PhylomeDB:Q1H5B6
PRIDE:Q1H5B6ProteinModelPortal:Q1H5B6RefSeq:NP_199111.1SMART:SM00088SMR:Q1H5B6STRING:3702.AT5G42970.1SUPFAM:SSF46785
TAIR:AT5G42970tair10-symbols:ATS4tair10-symbols:COP14tair10-symbols:COP8tair10-symbols:CSN4tair10-symbols:EMB134tair10-symbols:FUS4
tair10-symbols:FUS8UniGene:At.23570UniProt:Q1H5B6UniProt:Q8L5U0
Coordinates (TAIR10) chr5:-:17237470..17240649
Molecular Weight (calculated) 44959.80 Da
IEP (calculated) 4.60
GRAVY (calculated) -0.29
Length 397 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEALTNASA IGDQRQKIEQ YKLILSSVLS SNDLLQAQRF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIAQFT LTQIQPRVVS FEEQALVIRE
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)