AT5G42920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : THO complex, subunit 5 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
THO5; CONTAINS InterPro DOMAIN/s: THO complex, subunit 5 (InterPro:IPR019163); BEST Arabidopsis thaliana protein match is: THO complex, subunit 5 (TAIR:AT1G45233.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17206310..17209106 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79292.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 702 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYEKSHYVKA IKACRDFKSK YPDIDLVPEQ DFFRHAPEAI KDQSLSSDSS HVLMPKRLNF ELHQRKELCK HRARLEQQKK SLLETIAERK KFLSSLPLHL 101: KSLKKASLPV QNHLGIQHTK KLKQHNLAEL LPPPLYVLYS QLLAQKEAFE ESIELEVVGS LKDAQAYARQ QSRKDSGMSS NTESSRLEDD GPDDDDDGQR 201: RRKRPKKLTS KEGSDKAGLY QVHPLKIVLH IYDDEIPDTK SLKLVILKFE YLLKLNVVCV GAEGSQDGPE KNIFCNLFPD DAGLEPPHQS TKLILGDGQT 301: FDENRTSRPY KWVQHLAGID ISPVLLGQEA HNTDPAKSDT FVPDLSLYRQ QHRVQTVLRR IRLRKKAHLA LAEQLDLLMK HELPVVNCED APWALHKVLC 401: ALDSWLHIQS SASKSCSLTL NSVEQVPEPM EIDVDGRSIS GKEDFESIRE DGELPSLVTA AASLTSSNHT PSKVSNQARS RQLALMTKNL DSPISKGKSP 501: SFKKYEDDLD LVLDDDSEID EPTGRTEAHV EELCPEKADN SWVDYGSREF ALVFSRKTDG GKLWKLEAMV QISMEYPLRP PLFSLSLHAS SSSGNENGTN 601: ESDHYNELRA MEAEVNLHML KIIPSDQENY LLSHQIRCLA MLFDYYVDDP SPDSKRGTAT TVVDVGLCKP VDGKLLVRSF RGRDHRKMIS WKGRGCASGY 701: PC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)