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AT5G42860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45688.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT0IeggNOG:ENOG41108AYEMBL:AB008264EMBL:AK227557
EMBL:CP002688EnsemblPlants:AT5G42860EnsemblPlants:AT5G42860.1entrez:834297
GeneID:834297GO:GO:0005886GO:GO:0016021Gramene:AT5G42860.1
hmmpanther:PTHR31852hmmpanther:PTHR31852:SF44KEGG:ath:AT5G42860OMA:IVIVEPP
PhylomeDB:Q9FMN3Proteomes:UP000006548RefSeq:NP_199100.1TAIR:AT5G42860
TMHMM:TMhelixUniGene:At.6518UniGene:At.71339UniProt:Q9FMN3
Coordinates (TAIR10) chr5:-:17183339..17184857
Molecular Weight (calculated) 35024.50 Da
IEP (calculated) 10.69
GRAVY (calculated) -0.26
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MHAKTDSEVT SLSASSPTRS PRRPAYFVQS PSRDSHDGEK TATSFHSTPV LTSPMGSPPH SHSSSSRFSK INGSKRKGHA GEKQFAMIEE EGLLDDGDRE
101: QEALPRRCYV LAFIVGFSLL FAFFSLILYA AAKPQKPKIS VKSITFEQLK VQAGQDAGGI GTDMITMNAT LRMLYRNTGT FFGVHVTSSP IDLSFSQITI
201: GSGSIKKFYQ SRKSQRTVVV NVLGDKIPLY GSGSTLVPPP PPAPIPKPKK KKGPIVIVEP PAPPAPVPMR LNFTVRSRAY VLGKLVQPKF YKRIVCLINF
301: EHKKLSKHIP ITNNCTVTSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)