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AT5G42790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : proteasome alpha subunit F1
Curator
Summary (TAIR10)
encodes a protein with extensive homology to the largest subunit of the multicatalytic proteinase complex (proteasome). Negatively regulates thiol biosynthesis and arsenic tolerance.
Computational
Description (TAIR10)
proteasome alpha subunit F1 (PAF1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to arsenic, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit F2 (TAIR:AT1G47250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G42790-MONOMERBioGrid:19540EC:3.4.25.1eggNOG:COG0638
eggNOG:KOG0863EMBL:AB007647EMBL:AF043526EMBL:AF375447
EMBL:AY058128EMBL:AY085017EMBL:AY113047EMBL:CP002688
EMBL:M98495EnsemblPlants:AT5G42790EnsemblPlants:AT5G42790.1entrez:834290
Gene3D:3.60.20.10GeneID:834290Genevisible:P34066GO:GO:0000502
GO:GO:0004298GO:GO:0005634GO:GO:0005829GO:GO:0005886
GO:GO:0006511GO:GO:0019773GO:GO:0030163GO:GO:0046685
Gramene:AT5G42790.1hmmpanther:PTHR11599hmmpanther:PTHR11599:SF12HOGENOM:HOG000091080
InParanoid:P34066IntAct:P34066InterPro:IPR000426InterPro:IPR001353
InterPro:IPR023332InterPro:IPR029055iPTMnet:P34066KEGG:ath:AT5G42790
KO:K02725MEROPS:T01.976OMA:XRAQSELPaxDb:P34066
Pfam:P34066Pfam:PF00227Pfam:PF10584Pfscan:PS51475
PhylomeDB:P34066PIR:S39900PIR:T51974PRIDE:P34066
PRO:PR:P34066PROSITE:PS00388PROSITE:PS51475ProteinModelPortal:P34066
Proteomes:UP000006548Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425
Reactome:R-ATH-5632684Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168
RefSeq:NP_199093.1scanprosite:PS00388SMART:SM00948SMR:P34066
STRING:3702.AT5G42790.1SUPFAM:SSF56235TAIR:AT5G42790tair10-symbols:ARS5
tair10-symbols:ATPSM30tair10-symbols:PAF1UniGene:At.23724UniProt:P34066
Coordinates (TAIR10) chr5:-:17159270..17160975
Molecular Weight (calculated) 30477.70 Da
IEP (calculated) 4.73
GRAVY (calculated) -0.33
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)