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AT5G42780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeobox protein 27
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homeobox protein 27 (HB27); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 22 (TAIR:AT4G24660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19538eggNOG:ENOG410JXEIeggNOG:ENOG411041MEMBL:AB007647EMBL:AY084367EMBL:BT002832EMBL:BT004379
EMBL:CP002688EnsemblPlants:AT5G42780EnsemblPlants:AT5G42780.1entrez:834288Gene3D:1.10.10.60GeneID:834288Genevisible:Q9FMY7
GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0042803GO:GO:0046872Gramene:AT5G42780.1
hmmpanther:PTHR31948hmmpanther:PTHR31948:SF8HOGENOM:HOG000152565InParanoid:Q9FMY7IntAct:Q9FMY7InterPro:IPR006455InterPro:IPR006456
InterPro:IPR009057KEGG:ath:AT5G42780OMA:NETERFCPaxDb:Q9FMY7Pfam:PF04770Pfam:Q9FMY7Pfscan:PS51523
PRIDE:Q9FMY7PRO:PR:Q9FMY7ProDom:PD125774PROSITE:PS51523ProteinModelPortal:Q9FMY7Proteomes:UP000006548RefSeq:NP_199092.1
SMR:Q9FMY7STRING:3702.AT5G42780.1SUPFAM:SSF46689TAIR:AT5G42780tair10-symbols:AtHB27tair10-symbols:HB27tair10-symbols:ZHD13
TIGRfam:TIGR01565TIGRfam:TIGR01566TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniGene:At.30152UniProt:Q9FMY7
Coordinates (TAIR10) chr5:+:17154841..17155569
Molecular Weight (calculated) 27969.20 Da
IEP (calculated) 8.55
GRAVY (calculated) -1.02
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEIKPKKEE NSKRRRNVKP ICRETGDHVH YLPTCKTKPK PTRTHHAPPP ILDSIFKVTH KPHYYECRKN HAADIGTTAY DGCGEFVSST GEEDSLNCAA
101: CGCHRNFHRE ELIPENGGVT ETVLEVLKIS SCQFRRIFCS PYGGGKSEGK KKKKEKESYG GDPIIKDRFG GAEEEEGIVK RLKTKFTAEQ TEKMRDYAEK
201: LRWKVRPERQ EEVEEFCVEI GVNRKNFRIW MNNHKDKIII DE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)