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AT5G42765.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWS9eggNOG:ENOG4111Q50EMBL:CP002688EnsemblPlants:AT5G42765EnsemblPlants:AT5G42765.1entrez:834286GeneID:834286
GO:GO:0009507GO:GO:0009535GO:GO:0009579Gramene:AT5G42765.1hmmpanther:PTHR36398hmmpanther:PTHR36398:SF1InParanoid:F4K329
KEGG:ath:AT5G42765OMA:IDKFEQSPaxDb:F4K329PRIDE:F4K329ProteinModelPortal:F4K329Proteomes:UP000006548RefSeq:NP_568612.1
STRING:3702.AT5G42765.1TAIR:AT5G42765UniGene:At.71124UniGene:At.8453UniProt:F4K329
Coordinates (TAIR10) chr5:-:17150505..17151641
Molecular Weight (calculated) 25100.10 Da
IEP (calculated) 6.03
GRAVY (calculated) -0.19
Length 229 amino acids
Sequence (TAIR10)
(BLAST)
001: MARLIPISQP FFSSNTKPPP PPPIAAAQIS DHLPQIISRR DATVLLSSAT SLLLTLSPTN PAFAFSLGIS GPKEWLKDQK KKSSRFLLAP IDATRQALQS
101: AYLSLTSESD YTEKDLENLQ NLFKSSARDC VPKERSSLVD FQSKSGVEVC TFKLVVKNAA SLLDDKDPVK LEAENILDDL VRSFGSLIVL TNGVDMNLPS
201: DRKKVADGVT ETISYLDKFE KGVKDCLEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)