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AT5G42760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine carboxyl methyltransferase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine carboxyl methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00027, methylltransferase (InterPro:IPR011610), Leucine carboxyl methyltransferase (InterPro:IPR007213); Has 1965 Blast hits to 1962 proteins in 270 species: Archae - 38; Bacteria - 1757; Metazoa - 32; Fungi - 3; Plants - 47; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3315eggNOG:ENOG410IJK5EMBL:CP002688EnsemblPlants:AT5G42760EnsemblPlants:AT5G42760.1entrez:834285ExpressionAtlas:F4K327
Gene3D:3.40.50.150GeneID:834285GO:GO:0008168Gramene:AT5G42760.1hmmpanther:PTHR13600hmmpanther:PTHR13600:SF12InterPro:IPR007213
InterPro:IPR011610InterPro:IPR029063KEGG:00253+2.1.1.-KEGG:00270+2.1.1.-KEGG:00332+2.1.1.-KEGG:00340+2.1.1.-KEGG:00350+2.1.1.-
KEGG:00360+2.1.1.-KEGG:00380+2.1.1.-KEGG:00450+2.1.1.-KEGG:00522+2.1.1.-KEGG:00624+2.1.1.-KEGG:00627+2.1.1.-KEGG:00860+2.1.1.-
KEGG:00940+2.1.1.-KEGG:00941+2.1.1.-KEGG:00942+2.1.1.-KEGG:00945+2.1.1.-KEGG:00950+2.1.1.-KEGG:00981+2.1.1.-PANTHER:PTHR13600
PaxDb:F4K327Pfam:PF04072PRIDE:F4K327ProteinModelPortal:F4K327Proteomes:UP000006548RefSeq:NP_568611.2SMR:F4K327
STRING:3702.AT5G42760.2SUPFAM:SSF53335TAIR:AT5G42760TIGRfam:TIGR00027TIGRFAMs:TIGR00027UniGene:At.71124UniGene:At.8453
UniProt:F4K327
Coordinates (TAIR10) chr5:+:17148953..17150105
Molecular Weight (calculated) 39303.80 Da
IEP (calculated) 5.40
GRAVY (calculated) -0.27
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MRETMSEIEK QKPEEEESST TWPDIEEELV LPDVLRSEGV KKLHMSIQSE WDYLQKSACQ TAAGRALWKH VIHDPLAHLF AGETHLRNLH TKIQTDRLNN
101: AREVSGVILA VRTLWFDTRI QAALESFHGD AAQVVLLGAG MDARSYRLNC LNKSDVFEVD FQDVLETKAS LVQAAVNSRD ELRMTAKSLV RVAIDIRDND
201: WFEQLKKSGF LPEINTVWVL EGILYYLSHT EAMQVLNLIA EKCGLTSTVL LADFMNKPSA TLPNSVFHFY SDWPDQLLPT LGFSHVKLSQ IGDPDANFGL
301: LHDPRNLFNK LLRLPRTAQI HPDDGKPCCR LYLVEASGSP PQDNQASL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)