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AT5G42660.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.611
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF616)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF616); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT2G02910.1); Has 345 Blast hits to 345 proteins in 43 species: Archae - 14; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF06eggNOG:ENOG4111SG7EMBL:AY057714EMBL:AY124876
EMBL:CP002688EnsemblPlants:AT5G42660EnsemblPlants:AT5G42660.1entrez:834275
GeneID:834275GO:GO:0016021GO:GO:0016757Gramene:AT5G42660.1
hmmpanther:PTHR12956hmmpanther:PTHR12956:SF17InterPro:IPR006852KEGG:ath:AT5G42660
OMA:VYITEANPfam:PF04765PhylomeDB:Q93Z91Proteomes:UP000006548
RefSeq:NP_568609.2STRING:3702.AT5G42660.1TAIR:AT5G42660TMHMM:TMhelix
UniGene:At.8446UniProt:Q93Z91
Coordinates (TAIR10) chr5:-:17103062..17105785
Molecular Weight (calculated) 53064.80 Da
IEP (calculated) 10.07
GRAVY (calculated) -0.44
Length 463 amino acids
Sequence (TAIR10)
(BLAST)
001: MFNNNSVSIS VSDDESNDLN RIRARTRRKR KKVSHRTSYE LPRHVLRLFV RYWVVLVFLL AVGLLVFEST RIGFKSSDLK KPDLNGKESP SKKNEGNLNR
101: LDPTTKVIGG VRQRCLKLLP PEELEHLDIL ERKDSGSPVK RVVYLTDTDV SVGEMRGVRG NGTRFNLFTG NQTFAERENS FQVRETVSLH CGFFNENGGF
201: RISDKDKKFM TSCEVVVSTC AFGGGDNLYE PIGMSKTSSQ KVCYVAFWDE VTLTTQEAEG HKIDENDHIG KWRIVIVKDL PFTDQRLNGK IPKMLAHRLF
301: PDAKYSIWVD SKSQFRRDPL GVLDALLWRT NSVLAISEHG ARSSVYDEAN AVIKKHKATP EEVEVQINQY RHDKLPEDKR FNGKKALSEA SVIVREHTPL
401: TNLFMCLWFN EVVRFTSRDQ LSFPYVLWRL KVLKNINMFP VCTRKDLVNS IGHVRKAKPL VTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)