AT5G42540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : exoribonuclease 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN2 acts as a suppressor of posttranscriptional gene silencing. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
exoribonuclease 2 (XRN2); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: 5'-3' exoribonuclease 3 (TAIR:AT1G75660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17007513..17014534 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 116392.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1012 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGVPSFYRWL IQRYPLTIQE VIEEEPLEVN GGGVTIPIDS SKPNPNGYEY DNLYLDMNGI IHPCFHPEDK PSPTTFTEVF QCMFDYIDRL FVMVRPRKLL 0101: FMAIDGVAPR AKMNQQRARR FRAAKDAAEA AAEEEQLREE FEREGKKLPP KVDSQVFDSN VITPGTEFMA TLSFALRYYI HVRLNSDPGW KNIKVILSDA 0201: NVPGEGEHKI MSYIRCNKNH PGYNPNTHHC LYGLDADLIM LSLATHEIHF SILREVVFFP GEEGKCFLCG QEGHRAADCE GKIKRKTGEM LDNTEADVVV 0301: KKPYEFVNIW ILREYLEHDM QIPGAKKNLD RLIDDFIFIC FFVGNDFLPH MPTLEIREGA IELLMSVYKN KFRSAKKYLT DSSKLNLRNV ERFIKAVGMY 0401: ENQIFQKRAQ VQQRQSERFR RDKARDKARD NARDNAQASR QFSGKLVQLD SLDEVSDSLH SSPSRKYLRL SLDDNIGVAN VETENSLKAE ELDNEEDLKF 0501: KLKKLLRDKG DGFRSGNGEQ DKVKLNKVGW RERYYEEKFA AKSVEEMEQI RRDVVLKYTE GLCWIMHYYY HGVCSWNWFY PYHYAPFASD LKGLEKLDIK 0601: FELGSPFKPF NQLLAVLPSA SAHALPECYR SLMTNPDSPI ADFYPADFEI DMNGKRYSWQ GISKLPFVEE KRLLEAAAQV EKSLTNEEIR RNSALFDMLF 0701: VVASHPLGEL IRSLNSRTNN LSNEERATII EKIDPGLSDG MNGYIASCGG DSQPSCFCST VEGMEDVLTN QVICAIYKLP EDIRGSEITH QIPRLAIPKK 0801: TISLVDLKSG GLLWHEDGDK RRAPPKVIKI KRYNPEGSIS GGRLGKASHR LVLQTINAQP DYMNINSEPA LCPNTVFQNE RVPKKIPTFK DNGIQWISPP 0901: PSQITPKKMN SPQRQKAWKK DETPQSREKS KKLKSSLKVN PLKMKKTKSP QREFTREKKK ENITPQRKLT KAQRQVKHIR MMEEAKMIKQ RKKEKYLRKK 1001: AKYAQGAPPK TA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)