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AT5G42520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic pentacysteine 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic pentacysteine 6 (BPC6); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 4 (TAIR:AT2G21240.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:19509eggNOG:ENOG410IERQeggNOG:ENOG41120EVEMBL:AB016888
EMBL:AK221752EMBL:AK227246EMBL:AY088564EMBL:AY380572
EMBL:BT024874EMBL:CP002688EMBL:EF123107EMBL:EF123108
EnsemblPlants:AT5G42520EnsemblPlants:AT5G42520.1entrez:834259ExpressionAtlas:Q8L999
GeneID:834259Genevisible:Q8L999GO:GO:0003677GO:GO:0005634
GO:GO:0005730GO:GO:0006351GO:GO:0006355GO:GO:0009723
GO:GO:0042803hmmpanther:PTHR31421hmmpanther:PTHR31421:SF2HOGENOM:HOG000241671
InParanoid:Q8L999InterPro:IPR010409KEGG:ath:AT5G42520ncoils:Coil
OMA:NPREMHMPANTHER:PTHR31421PaxDb:Q8L999Pfam:PF06217
Pfam:Q8L999PhylomeDB:Q8L999PRIDE:Q8L999PRO:PR:Q8L999
Proteomes:UP000006548RefSeq:NP_001078690.1RefSeq:NP_568605.1SMART:SM01226
STRING:3702.AT5G42520.1TAIR:AT5G42520tair10-symbols:ATBPC6tair10-symbols:BBR/BPC6
tair10-symbols:BPC6UniGene:At.19893UniGene:At.30165UniProt:Q8L999
Coordinates (TAIR10) chr5:+:17001287..17002466
Molecular Weight (calculated) 38241.40 Da
IEP (calculated) 9.65
GRAVY (calculated) -0.84
Length 342 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDGGHRENG RHKAAVQGQW LMQHQPSMKQ VMSIIAERDA AIQERNLAIS EKKAAVAERD MAFLQRDTAI AERNNAIMER DSALTALQYR ENSMVTAPAA
101: NMSACPPGCQ ISRGVKHLHH PHMHHHHQQH HIPQLTENAY ETREMEPNDG LPTSPPAGST LESAKPKRGK RVNPKATTQT AANKRGPKNQ RKVKKESEDD
201: LNKIMFVKTT HDYTDEDSSK HILIGSKSDW KSQEMVGLNQ VVYDETTMPP PVCSCTGVLR QCYKWGNGGW QSSCCTTTLS MYPLPALPNK RHARVGGRKM
301: SGSAFNKLLS RLAAEGHHDL SNPVDLKDHW AKHGTNRYIT IK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)