AT5G42490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.968 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ATP binding microtubule motor family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3490 (InterPro:IPR021881), Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT4G24170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16988609..16992622 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 123641.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.48 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1087 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASGGKGEKI LVSVRVRPQN EKEKARNDIC DWECVNNTTI VCNNNLPERS LFPSTYTFDK VFGFDSPTKQ VYEDGAKEVA LCVLGGINSS IFAYGQTSSG 0101: KTYTMCGITK FAMDDIFCYI QKHTDRKFTL KFSAIEIYNE AVRDLLSGDN NQRRLLDDPE RGTVVEKLIE ETIQDRTHLE ELLTVCETQR KIGETSLNEV 0201: SSRSHQILRL TIESTGREYS PDSSSTLAAS VCFIDLAGSE RASQTLSAGT RLKEGCHINR SLLTLGTVIR KLRFDPCDIA QSQVENLLKS TAEERSSRMD 0301: EQSMFSSMDF DADFRRRSYD STDLGEPSII NNLTERNFEF LENSEEDDFL LDDKTPQFSR HNLYDDWEEL VQITDERLED ACKEVRCIEP EAEQSSGQPA 0401: ACESHDSLDD IVDKIAISEV LSPRKEETLP GLEHEQSYNP STGIEKAENE DMEISIPAAK EETLPALEYE QSYNSYTGNE RAENEVMEIS TPRKDEPLSA 0501: LEYEQSYNSS TSNEKAENED MEISTPAEKE NVDLSLKTID VNAKPETYEL TLKNSDLEIG PSVEAQESQE SVNEEEQMKN EERKMSPSTK QAEQCLNKEE 0601: NAQSEQQSTE DCELNSLPIN NQSEATVEVE LTPNDAKLDE DATSRDKWES KQQQEADKDC NESSVCKNIG TDDNDNDTYM ALKEKVKEMQ KKIEYLMSMH 0701: TAEQQQSPSF RRDFKSPPEY FTAKRSRSCR ENLLSVRSPH WFESLEVSNN TSPTWRVMQT KASPGRPNTS SISFDSGSST SIDTRSLKDY DPEMGNSFRE 0801: FVAGLEEMAK KHHSIDSTPE LDYGIPYAPT KTERMEIRPE SPADSVRGNE NALPNPQDIN KETTDATNNQ SQREQVGDSV EEAKPKETDS TEASQEKLQV 0901: AANGQYSISS SDFERQQRKI IELWAACNVP LVHRTYFFLL FKGDPSDYVY MEVELRRLSF LKQTISNDME TSRMQTVKAL TREKEWISKQ LPKKFPWNQR 1001: IGLYQKWGVE VNSKQRSLQV AHKLWTNTQD MDHIKESASL VAKLLGFVEP SRMPKEMFGL SLLPRTENVK SSGWRFTKSF SAIRLTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)