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AT5G42490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.678
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP binding microtubule motor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3490 (InterPro:IPR021881), Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT4G24170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5059eggNOG:KOG0242EMBL:AB016888EMBL:CP002688EnsemblPlants:AT5G42490EnsemblPlants:AT5G42490.1entrez:834256
Gene3D:3.40.850.10GeneID:834256GO:GO:0003777GO:GO:0005524GO:GO:0005874GO:GO:0007018Gramene:AT5G42490.1
hmmpanther:PTHR24115hmmpanther:PTHR24115:SF496HOGENOM:HOG000272678InterPro:IPR001752InterPro:IPR019821InterPro:IPR021881InterPro:IPR027417
InterPro:IPR027640KEGG:ath:AT5G42490KO:K11498ncoils:CoilOMA:NDICDWEPANTHER:PTHR24115Pfam:PF00225
Pfam:PF11995Pfscan:PS50067PhylomeDB:Q9FIG8PRINTS:PR00380PROSITE:PS00411PROSITE:PS50067Proteomes:UP000006548
RefSeq:NP_199064.1scanprosite:PS00411SMART:SM00129SMR:Q9FIG8STRING:3702.AT5G42490.1SUPFAM:SSF52540TAIR:AT5G42490
UniGene:At.55319UniProt:Q9FIG8
Coordinates (TAIR10) chr5:-:16988609..16992622
Molecular Weight (calculated) 123641.00 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.84
Length 1087 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASGGKGEKI LVSVRVRPQN EKEKARNDIC DWECVNNTTI VCNNNLPERS LFPSTYTFDK VFGFDSPTKQ VYEDGAKEVA LCVLGGINSS IFAYGQTSSG
0101: KTYTMCGITK FAMDDIFCYI QKHTDRKFTL KFSAIEIYNE AVRDLLSGDN NQRRLLDDPE RGTVVEKLIE ETIQDRTHLE ELLTVCETQR KIGETSLNEV
0201: SSRSHQILRL TIESTGREYS PDSSSTLAAS VCFIDLAGSE RASQTLSAGT RLKEGCHINR SLLTLGTVIR KLRFDPCDIA QSQVENLLKS TAEERSSRMD
0301: EQSMFSSMDF DADFRRRSYD STDLGEPSII NNLTERNFEF LENSEEDDFL LDDKTPQFSR HNLYDDWEEL VQITDERLED ACKEVRCIEP EAEQSSGQPA
0401: ACESHDSLDD IVDKIAISEV LSPRKEETLP GLEHEQSYNP STGIEKAENE DMEISIPAAK EETLPALEYE QSYNSYTGNE RAENEVMEIS TPRKDEPLSA
0501: LEYEQSYNSS TSNEKAENED MEISTPAEKE NVDLSLKTID VNAKPETYEL TLKNSDLEIG PSVEAQESQE SVNEEEQMKN EERKMSPSTK QAEQCLNKEE
0601: NAQSEQQSTE DCELNSLPIN NQSEATVEVE LTPNDAKLDE DATSRDKWES KQQQEADKDC NESSVCKNIG TDDNDNDTYM ALKEKVKEMQ KKIEYLMSMH
0701: TAEQQQSPSF RRDFKSPPEY FTAKRSRSCR ENLLSVRSPH WFESLEVSNN TSPTWRVMQT KASPGRPNTS SISFDSGSST SIDTRSLKDY DPEMGNSFRE
0801: FVAGLEEMAK KHHSIDSTPE LDYGIPYAPT KTERMEIRPE SPADSVRGNE NALPNPQDIN KETTDATNNQ SQREQVGDSV EEAKPKETDS TEASQEKLQV
0901: AANGQYSISS SDFERQQRKI IELWAACNVP LVHRTYFFLL FKGDPSDYVY MEVELRRLSF LKQTISNDME TSRMQTVKAL TREKEWISKQ LPKKFPWNQR
1001: IGLYQKWGVE VNSKQRSLQV AHKLWTNTQD MDHIKESASL VAKLLGFVEP SRMPKEMFGL SLLPRTENVK SSGWRFTKSF SAIRLTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)