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AT5G42470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro:IPR010358); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFRGeggNOG:ENOG410Y1T7EMBL:BT015735EMBL:BT020175EMBL:CP002688EnsemblPlants:AT5G42470EnsemblPlants:AT5G42470.1
entrez:834254GeneID:834254Gramene:AT5G42470.1hmmpanther:PTHR15189hmmpanther:PTHR15189:SF7HOGENOM:HOG000030642IntAct:Q5XF81
InterPro:IPR010358KEGG:ath:AT5G42470KO:K12173OMA:FSNIPVYPfam:PF06113PhylomeDB:Q5XF81Proteomes:UP000006548
RefSeq:NP_199062.2STRING:3702.AT5G42470.1TAIR:AT5G42470UniGene:At.30170UniProt:Q5XF81
Coordinates (TAIR10) chr5:+:16982365..16984738
Molecular Weight (calculated) 44120.10 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.23
Length 382 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFEEFPPLI ADQLHYLLNH SPDSIKIANV WSGNKINPKI LDRFTLVIPY CLETIKWDVI YNSEYAMDPP DFVFGPDDED FVPCKCSAIA PDDDQISSLE
101: KALSEWDHED STRLLVIIQG LRDQYVAYQR RRVGQVDDDR VKFEISTVLT RKGIEMQMAS GVDKPEEVKF AVPLVMDMNI NKMVVGCPWK HQQKIYLQVV
201: YPILRKYEAA PSAPRLKLVS YYDLKSLFSV EDVKLSPWMD GMCLAEYLPH LEETLERQIH EAVAAIDLRR SFIEALSLNL GRPLEADPTF CRKATFLNAS
301: GQFTFMVHFF FSTQFPKQQP TLMLQSCQHL NQSSVPVKSN LLTEYPWSPR WEVGRMAERL CDFLTDEAVN FKKYCNEALL QH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)