AT5G42450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 29992 Blast hits to 12037 proteins in 182 species: Archae - 10; Bacteria - 16; Metazoa - 15; Fungi - 6; Plants - 29705; Viruses - 0; Other Eukaryotes - 240 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16977297..16978850 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58307.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.88 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 517 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLHMILSQRV ILLRKYHSSA NALVTKSPNS IPELVKHIDS DLIRNAHKVF DEIPELDVIS ATAVIGRFVK ESRHVEASQA FKRLLCLGIR PNEFTFGTVI 101: GSSTTSRDVK LGKQLHCYAL KMGLASNVFV GSAVLNCYVK LSTLTDARRC FDDTRDPNVV SITNLISGYL KKHEFEEALS LFRAMPERSV VTWNAVIGGF 201: SQTGRNEEAV NTFVDMLREG VVIPNESTFP CAITAISNIA SHGAGKSIHA CAIKFLGKRF NVFVWNSLIS FYSKCGNMED SLLAFNKLEE EQRNIVSWNS 301: MIWGYAHNGR GEEAVAMFEK MVKDTNLRPN NVTILGVLFA CNHAGLIQEG YMYFNKAVND YDDPNLLELE HYACMVDMLS RSGRFKEAEE LIKSMPLDPG 401: IGFWKALLGG CQIHSNKRLA KLAASKILEL DPRDVSSYVM LSNAYSAMEN WQNVSLIRRK MKETGLKRFT GCSWIEVRDQ IRVFVNADKN NELKDEVYRM 501: LALVSQHLEE NECWKDL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)