suba logo
AT5G42440.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 0.846
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein kinase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: phytosulfokin receptor 1 (TAIR:AT2G02220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G42440-MONOMEReggNOG:COG0515eggNOG:KOG1187EMBL:AB016888EMBL:BT011003EMBL:CP002688EnsemblPlants:AT5G42440
EnsemblPlants:AT5G42440.1entrez:834250Gene3D:2.60.120.200GeneID:834250GO:GO:0004674GO:GO:0005524GO:GO:0016021
Gramene:AT5G42440.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF141HOGENOM:HOG000116550IntAct:Q9FIH3InterPro:IPR000719InterPro:IPR001245
InterPro:IPR008271InterPro:IPR011009InterPro:IPR013320InterPro:IPR017441KEGG:ath:AT5G42440OMA:SSWSFYGPfam:PF07714
Pfscan:PS50011PhylomeDB:Q9FIH3PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011Proteomes:UP000006548RefSeq:NP_199059.1
scanprosite:PS00107scanprosite:PS00108SMART:SM00220SMR:Q9FIH3STRING:3702.AT5G42440.1SUPFAM:SSF56112TAIR:AT5G42440
TMHMM:TMhelixUniGene:At.30173UniProt:Q9FIH3
Coordinates (TAIR10) chr5:-:16973434..16974513
Molecular Weight (calculated) 40481.80 Da
IEP (calculated) 5.03
GRAVY (calculated) -0.01
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYQISLILA TSISSIFLLL IVFTVVMIVC RRRPPIQNHP RRNRNFPDPD PDLNTETVTE SFDPSICEIS MAELTIATKN FSSDLIVGDG SFGLVYRAQL
101: SNGVVVAVKK LDHDALQGFR EFAAEMDTLG RLNHPNIVRI LGYCISGSDR ILIYEFLEKS SLDYWLHETD EENSPLTWST RVNITRDVAK GLAYLHGLPK
201: PIIHRDIKSS NVLLDSDFVA HIADFGLARR IDASRSHVST QVAGTMGYMP PEYWEGNTAA TVKADVYSFG VLMLELATRR RPNLTVVVDE KEVGLAQWAV
301: IMVEQNRCYE MLDFGGVCGS EKGVEEYFRI ACLCIKESTR ERPTMVQVVE LLEELCRFM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)