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AT5G42420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.964
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT1G21070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP1SeggNOG:KOG1441EMBL:AB016888EMBL:AK228744EMBL:BT025259EMBL:CP002688EMBL:KJ667159
EMBL:KP872770EnsemblPlants:AT5G42420EnsemblPlants:AT5G42420.1entrez:834248ExpressionAtlas:Q9FIH5GeneID:834248GO:GO:0005338
GO:GO:0005793GO:GO:0005794GO:GO:0008643GO:GO:0015786GO:GO:0016021GO:GO:0022857GO:GO:0090480
Gramene:AT5G42420.1hmmpanther:PTHR11132hmmpanther:PTHR11132:SF73HOGENOM:HOG000242404InterPro:IPR004853InterPro:IPR031089OMA:NIIGMAL
PANTHER:PTHR11132:SF73Pfam:PF03151PhylomeDB:Q9FIH5Proteomes:UP000006548RefSeq:NP_199057.1STRING:3702.AT5G42420.1SUPFAM:0043518
TAIR:AT5G42420TMHMM:TMhelixUniGene:At.30175UniProt:Q9FIH5
Coordinates (TAIR10) chr5:+:16968819..16970225
Molecular Weight (calculated) 38059.30 Da
IEP (calculated) 8.47
GRAVY (calculated) 0.68
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAENERKSP SAVSDMGAWA MNVISSVGII MANKQLMSSS GFAFSFATTL TGFHFALTAL VGMVSNATGF SASKHVPMWE LIWFSIVANV SIAAMNFSLM
101: LNSVGFYQIS KLSMIPVVCV MEWILHSKRY SREVKISVVV VVVGVGICTV TDVKVNAKGF ICACVAIFSS SLQQILIGSL QKKYSIGSFE LLSKTAPIQA
201: FSLLVVGPLV DYLLSGKFIM KYNMSSGCFL FILLSCGLAV FCNISQYLCI GRFSAVSFQV IGHMKTVCIL TLGWLLFDSA MTFKNVAGMI VAIVGMVIYS
301: WAMELEKQSI IAAKALNSVK HSLTEEEFEL LKEGVETTQS KDVELGRTKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)