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AT5G42380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : calmodulin like 37
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
calmodulin like 37 (CML37); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to ozone; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-like 38 (TAIR:AT1G76650.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19494eggNOG:COG5126eggNOG:KOG0027EMBL:AB016888EMBL:AY088908EMBL:AY093775EMBL:AY143820
EMBL:CP002688EnsemblPlants:AT5G42380EnsemblPlants:AT5G42380.1entrez:834244Gene3D:1.10.238.10GeneID:834244Genevisible:Q9FIH9
GO:GO:0005509GO:GO:0005634GO:GO:0005737GO:GO:0010193Gramene:AT5G42380.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF622
HOGENOM:HOG000233018InParanoid:Q9FIH9InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247iPTMnet:Q9FIH9KEGG:ath:AT5G42380
KO:K13448OMA:RCGMAATPaxDb:Q9FIH9Pfam:PF13499Pfam:PF13833Pfam:Q9FIH9Pfscan:PS50222
PhylomeDB:Q9FIH9PRIDE:Q9FIH9PRO:PR:Q9FIH9PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q9FIH9Proteomes:UP000006548
RefSeq:NP_199053.1scanprosite:PS00018SMART:SM00054SMR:Q9FIH9STRING:3702.AT5G42380.1SUPFAM:SSF47473TAIR:AT5G42380
tair10-symbols:CML37tair10-symbols:CML39UniGene:At.30178UniGene:At.74001UniProt:Q9FIH9
Coordinates (TAIR10) chr5:-:16942758..16943315
Molecular Weight (calculated) 20603.00 Da
IEP (calculated) 4.30
GRAVY (calculated) -0.55
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLAKNQKSS LSRLYKKVSS KRSESSRNLE DESRTSSNSS GSSSLNVNEL RTVFDYMDAN SDGKISGEEL QSCVSLLGGA LSSREVEEVV KTSDVDGDGF
101: IDFEEFLKLM EGEDGSDEER RKELKEAFGM YVMEGEEFIT AASLRRTLSR LGESCTVDAC KVMIRGFDQN DDGVLSFDEF VLMMR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)