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AT5G42200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.968
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G49220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19475EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AB017067EMBL:AY088186EMBL:BT003837
EMBL:BT005191EMBL:CP002688EMBL:DQ086857EnsemblPlants:AT5G42200EnsemblPlants:AT5G42200.1entrez:834225Gene3D:3.30.40.10
GeneID:834225Genevisible:Q8L9W3GO:GO:0004842GO:GO:0008270GO:GO:0016021GO:GO:0016567GO:GO:0016874
Gramene:AT5G42200.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF77HOGENOM:HOG000237642InParanoid:Q8L9W3InterPro:IPR001841InterPro:IPR013083
KEGG:ath:AT5G42200KO:K19037OMA:WCSTRRRPaxDb:Q8L9W3Pfam:PF13639Pfam:Q8L9W3Pfscan:PS50089
PhylomeDB:Q8L9W3PRIDE:Q8L9W3PRO:PR:Q8L9W3PROSITE:PS50089ProteinModelPortal:Q8L9W3Proteomes:UP000006548RefSeq:NP_199035.1
SMART:SM00184SMR:Q8L9W3STRING:3702.AT5G42200.1SUPFAM:SSF57850TAIR:AT5G42200TMHMM:TMhelixUniGene:At.43326
UniGene:At.75664UniPathway:UPA00143UniProt:Q8L9W3
Coordinates (TAIR10) chr5:+:16860523..16861014
Molecular Weight (calculated) 17757.90 Da
IEP (calculated) 7.59
GRAVY (calculated) 0.27
Length 163 amino acids
Sequence (TAIR10)
(BLAST)
001: MHYTRISPAL VPSLSPTAAA ESSGGGTMIA TVFMALLLPC VGMCIVFLIY LFLLWCSTRR RIERLRFAEP VKPVTGKGLS VLELEKIPKL TGRELAVIAR
101: STECAVCLED IESGQSTRLV PGCNHGFHQL CADTWLSNHT VCPVCRAELA PNLPQCNENQ SPC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)