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AT5G42180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G51890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G42180-MONOMEREC:1.11.1.7eggNOG:ENOG410IHQ5eggNOG:ENOG410YE7F
EMBL:AB017067EMBL:AY063962EMBL:AY096403EMBL:CP002688
EMBL:X98316EMBL:X99096EnsemblPlants:AT5G42180EnsemblPlants:AT5G42180.1
entrez:834223GeneID:834223Genevisible:Q43872GO:GO:0004601
GO:GO:0005576GO:GO:0006979GO:GO:0009505GO:GO:0009664
GO:GO:0020037GO:GO:0042744GO:GO:0046872GO:GO:0098869
Gramene:AT5G42180.1hmmpanther:PTHR31235hmmpanther:PTHR31235:SF67HOGENOM:HOG000237556
InParanoid:Q43872InterPro:IPR000823InterPro:IPR002016InterPro:IPR010255
InterPro:IPR019793iPTMnet:Q43872KEGG:00940+1.11.1.7KEGG:ath:AT5G42180
KO:K00430OMA:DEVRANCPaxDb:Q43872PeroxiBase:230
Pfam:PF00141Pfam:Q43872Pfscan:PS50873PhylomeDB:Q43872
PRIDE:Q43872PRINTS:PR00458PRINTS:PR00461PRO:PR:Q43872
PROSITE:PS00435PROSITE:PS50873ProteinModelPortal:Q43872Proteomes:UP000006548
RefSeq:NP_199033.1scanprosite:PS00435SMR:Q43872STRING:3702.AT5G42180.1
SUPFAM:SSF48113TAIR:AT5G42180UniGene:At.23304UniProt:Q43872
Coordinates (TAIR10) chr5:+:16852702..16854021
Molecular Weight (calculated) 34707.70 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.21
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MNAHMLNLLV IVIFVVSFDV QALSPHYYDH TCPQADHIVT NAVKKAMSND QTVPAALLRM HFHDCFVRGC DGSVLLDSKG KNKAEKDGPP NISLHAFYVI
101: DNAKKALEEQ CPGIVSCADI LSLAARDAVA LSGGPTWAVP KGRKDGRISK AIETRQLPAP TFNISQLRQN FGQRGLSMHD LVALSGGHTL GFAHCSSFQN
201: RLHKFNTQKE VDPTLNPSFA ARLEGVCPAH NTVKNAGSNM DGTVTSFDNI YYKMLIQGKS LFSSDESLLA VPSTKKLVAK YANSNEEFER AFVKSMIKMS
301: SISGNGNEVR LNCRRVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)