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AT5G42140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.950
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT1G76950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5184eggNOG:ENOG410IKQXEMBL:AB017067EMBL:CP002688
EnsemblPlants:AT5G42140EnsemblPlants:AT5G42140.1entrez:834219Gene3D:2.130.10.30
Gene3D:2.30.29.30Gene3D:3.30.40.10GeneID:834219GO:GO:0046872
Gramene:AT5G42140.1hmmpanther:PTHR22870hmmpanther:PTHR22870:SF91HOGENOM:HOG000240974
InterPro:IPR000306InterPro:IPR000408InterPro:IPR001849InterPro:IPR009091
InterPro:IPR011011InterPro:IPR011993InterPro:IPR013083InterPro:IPR013591
InterPro:IPR017455InterPro:IPR027988KEGG:ath:AT5G42140ncoils:Coil
OMA:ICESTARPfam:PF00415Pfam:PF01363Pfam:PF08381
Pfam:PF13713Pfam:PF16457Pfscan:PS50012Pfscan:PS50178
Pfscan:PS51514PhylomeDB:Q9FHX1PRINTS:PR00633PROSITE:PS00626
PROSITE:PS50012PROSITE:PS50178PROSITE:PS51514Proteomes:UP000006548
RefSeq:NP_199029.1scanprosite:PS00626SMART:SM00064SMR:Q9FHX1
STRING:3702.AT5G42140.1SUPFAM:SSF50729SUPFAM:SSF50985SUPFAM:SSF57903
TAIR:AT5G42140UniGene:At.28039UniProt:Q9FHX1
Coordinates (TAIR10) chr5:-:16837547..16841640
Molecular Weight (calculated) 116504.00 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.38
Length 1073 amino acids
Sequence (TAIR10)
(BLAST)
0001: MFTRALLYVL QALIALKKGA QLLKYGRKGK PKFCPFRLSN DETSLIWISN GGEKRLKLAT VSKIVPGQRT AVFQRYLRPD KDYLSFSLIY SNRKRTLDLI
0101: CKDKVEAEVW IAGLKALISG QAGRSKIDGW SDGGLSIADS RDLTLSSPTN SSVCASRDFN IADSPYNSTN FPRTSRTENS VSSERSHVAS DSPNMLVRGT
0201: GSDAFRVSVS SVQSSSSHGS APDDCDALGD VYIWGEVLCE NVTKFGADKN IGYLGSRSDV LIPKPLESNV VLDVHHIACG VKHAALVSRQ GEVFTWGEAS
0301: GGRLGHGMGK DVTGPQLIES LAATSIDFVA CGEFHTCAVT MTGEIYTWGD GTHNAGLLGH GTDVSHWIPK RISGPLEGLQ IASVSCGPWH TALITSTGQL
0401: FTFGDGTFGV LGHGDKETVF YPREVESLSG LRTIAVACGV WHAAAIVEVI VTHSSSSVSS GKLFTWGDGD KSRLGHGDKE PRLKPTCVSA LIDHTFHRVA
0501: CGHSLTVGLT TSGKVYTMGS TVYGQLGNPN ADGKLPCLVE DKLTKDCVEE IACGAYHVAV LTSRNEVFTW GKGANGRLGH GDVEDRKAPT LVDALKERHV
0601: KNIACGSNFT AAICLHKWVS GTEQSQCSAC RQAFGFTRKR HNCYNCGLVH CHSCSSKKSL KAALAPNPGK PYRVCDSCHS KLSKVSEANI DSRKNVMPRL
0701: SGENKDRLDK TEIRLAKSGI PSNIDLIKQL DNRAARQGKK ADTFSLVRTS QTPLTQLKDA LTNVADLRRG PPKPAVTPSS SRPVSPFSRR SSPPRSVTPI
0801: PLNVGLGFST SIAESLKKTN ELLNQEVVRL RAQAESLRHR CEVQEFEVQK SVKKVQEAMS LAAEESAKSE AAKEVIKSLT AQVKDIAALL PPGAYEAETT
0901: RTANLLNGFE QNGFHFTNAN GQRQSRSDSM SDTSLASPLA MPARSMNGLW RNSQSPRNTD ASMGELLSEG VRISNGFSED GRNSRSSAAS ASNASQVEAE
1001: WIEQYEPGVY ITLLALGDGT RDLKRVRFSR RRFREQQAET WWSENRERVY EKYNIRGTDR SSVATSPISQ SQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)