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AT5G42100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : endoplasmic reticulum 17270015
AmiGO : plasma membrane 17270015
SwissProt : extracellular 16381842
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : plasma membrane 17270015
TAIR : plasma membrane 14517339
TAIR : endoplasmic reticulum 17270015
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17270015 (2007): endoplasmic reticulum
  • PMID:17270015 (2007): plasma membrane
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:16287169 (2006): extracellular region
  • PMID:14517339 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-1,3-glucanase_putative
Curator
Summary (TAIR10)
encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd
Computational
Description (TAIR10)
beta-1,3-glucanase_putative (BG_PPAP); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, glucan endo-1,3-beta-D-glucosidase activity; INVOLVED IN: cell communication; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G32860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G42100-MONOMERBioCyc:ARA:GQT-196-MONOMERCAZy:GH17EC:3.2.1.39eggNOG:ENOG410JA2QeggNOG:ENOG4111BDNEMBL:AB017067
EMBL:AY054690EMBL:AY084866EMBL:BT008863EMBL:CP002688EnsemblPlants:AT5G42100EnsemblPlants:AT5G42100.1entrez:834215
ExpressionAtlas:Q9FHX5Gene3D:3.20.20.80GeneID:834215Genevisible:Q9FHX5GO:GO:0005618GO:GO:0005783GO:GO:0005886
GO:GO:0005975GO:GO:0006952GO:GO:0007154GO:GO:0009505GO:GO:0009506GO:GO:0031225GO:GO:0042973
GO:GO:0046658GO:GO:0071555hmmpanther:PTHR32227hmmpanther:PTHR32227:SF29HOGENOM:HOG000238220InParanoid:Q9FHX5InterPro:IPR000490
InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT5G42100OMA:KGRFVECPaxDb:Q9FHX5Pfam:PF00332Pfam:Q9FHX5
PhylomeDB:Q9FHX5PRIDE:Q9FHX5PRO:PR:Q9FHX5PROSITE:PS00587ProteinModelPortal:Q9FHX5Proteomes:UP000006548RefSeq:NP_199025.1
scanprosite:PS00587SMR:Q9FHX5STRING:3702.AT5G42100.1SUPFAM:SSF51445TAIR:AT5G42100tair10-symbols:ATBG_PAPtair10-symbols:ATBG_PPAP
tair10-symbols:BG_PPAPTMHMM:TMhelixUniGene:At.67156UniGene:At.7792UniProt:Q9FHX5
Coordinates (TAIR10) chr5:-:16829460..16831168
Molecular Weight (calculated) 45360.30 Da
IEP (calculated) 7.49
GRAVY (calculated) 0.07
Length 425 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSLQSLF SLFCLALFSL PLIVSSIGIN YGQVANNLPP PKNVIPLLKS VGATKVKLYD ADPQALRAFA GSGFELTVAL GNEYLAQMSD PIKAQGWVKE
101: NVQAYLPNTK IVAIVVGNEV LTSNQSALTA ALFPAMQSIH GALVDCGLNK QIFVTTAHSL AILDVSYPPS ATSFRRDLLG SLTPILDFHV KTGSPILINA
201: YPFFAYEENP KHVSLDFVLF QPNQGFTDPG SNFHYDNMLF AQVDAVYHAL DAVGISYKKV PIVVSETGWP SNGDPQEVGA TCDNARKYNG NLIKMMMSKK
301: MRTPIRPECD LTIFVFALFN ENMKPGPTSE RNYGLFNPDG TPVYSLGIKT SSTHSSGSGS SNSTGGSSSG GGGNTGGSSS GGGIYQPVTG NPSPDYMSIS
401: SAGGKGRFVE CVLFFFLLCI IKLRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)