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AT5G42080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.623
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24012629 (2013): nucleus
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : dynamin-like protein
Curator
Summary (TAIR10)
Encodes a dynamin-like protein related to phragmoplastin. Mutations in this gene, in combination with mutation in ADL1E, result in defects in embryogenesis, cell plate formation and trichome branching. Also controls vascular patterning in combination with VAN3 and GNOM. DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.
Computational
Description (TAIR10)
dynamin-like protein (DL1); FUNCTIONS IN: protein binding, clathrin binding, GTP binding, GTPase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin, GTPase region, conserved site (InterPro:IPR019762), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1B (TAIR:AT3G61760.1); Has 2870 Blast hits to 2761 proteins in 321 species: Archae - 2; Bacteria - 66; Metazoa - 1056; Fungi - 810; Plants - 578; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G42080-MONOMERBioCyc:ARA:GQT-1043-MONOMERBioCyc:ARA:GQT-1044-MONOMERBioGrid:19463DIP:DIP-37642NeggNOG:COG0699eggNOG:KOG0446
EMBL:AB017067EMBL:AK230240EMBL:AY088201EMBL:AY094408EMBL:BT001063EMBL:BT025994EMBL:CP002688
EMBL:L36939EMBL:L38614EnsemblPlants:AT5G42080EnsemblPlants:AT5G42080.1entrez:834213ExpressionAtlas:P42697Gene3D:3.40.50.300
GeneID:834213Genevisible:P42697GO:GO:0000911GO:GO:0003924GO:GO:0005525GO:GO:0005773GO:GO:0005774
GO:GO:0005829GO:GO:0005874GO:GO:0005886GO:GO:0009504GO:GO:0009506GO:GO:0009524GO:GO:0009535
GO:GO:0009793GO:GO:0009920GO:GO:0010051GO:GO:0010091GO:GO:0030276GO:GO:0043424GO:GO:0072583
hmmpanther:PTHR11566hmmpanther:PTHR11566:SF58HOGENOM:HOG000161068InParanoid:P42697IntAct:P42697InterPro:IPR000375InterPro:IPR001401
InterPro:IPR003130InterPro:IPR019762InterPro:IPR020850InterPro:IPR022812InterPro:IPR027417InterPro:IPR030381iPTMnet:P42697
MINT:MINT-7712636OMA:DKMREGSPANTHER:PTHR11566PaxDb:P42697PDB:3T34PDB:3T35PDBsum:3T34
PDBsum:3T35Pfam:P42697Pfam:PF00350Pfam:PF01031Pfam:PF02212Pfscan:PS51388Pfscan:PS51718
PhylomeDB:P42697PIR:S59558PRIDE:P42697PRINTS:PR00195PRO:PR:P42697PROSITE:PS00410PROSITE:PS51388
PROSITE:PS51718ProteinModelPortal:P42697Proteomes:UP000006548RefSeq:NP_568602.3RefSeq:NP_851120.1scanprosite:PS00410SMART:SM00053
SMART:SM00302SMR:P42697STRING:3702.AT5G42080.1SUPFAM:SSF52540TAIR:AT5G42080tair10-symbols:ADL1tair10-symbols:ADL1A
tair10-symbols:AG68tair10-symbols:DL1tair10-symbols:DRP1Atair10-symbols:RSW9UniGene:At.10365UniProt:P42697
Coordinates (TAIR10) chr5:-:16820661..16824536
Molecular Weight (calculated) 68176.20 Da
IEP (calculated) 8.51
GRAVY (calculated) -0.28
Length 610 amino acids
Sequence (TAIR10)
(BLAST)
001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)