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AT5G42070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid
  • PMID:15322131 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0WCeggNOG:ENOG410XZGCEMBL:AY088853EMBL:AY091156EMBL:AY114054EMBL:CP002688EnsemblPlants:AT5G42070
EnsemblPlants:AT5G42070.1entrez:834212GeneID:834212GO:GO:0009507GO:GO:0009535Gramene:AT5G42070.1hmmpanther:PTHR12446
HOGENOM:HOG000149121InterPro:IPR028307KEGG:ath:AT5G42070OMA:EEKESGCPANTHER:PTHR12446Proteomes:UP000006548RefSeq:NP_568601.1
STRING:3702.AT5G42070.1TAIR:AT5G42070UniGene:At.30191UniProt:Q8RWR9
Coordinates (TAIR10) chr5:-:16819118..16820119
Molecular Weight (calculated) 17682.40 Da
IEP (calculated) 8.77
GRAVY (calculated) -0.68
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MANSISSISL PRCFIFNNGS HKSRPWPSSS SFFLNKSSKH HPHPLLSLSS SPSSVVETDN DDDNDLTFSG CRACGKEEKE SGCNGDGRIQ GGIATVPGFG
101: WWPIKAYRPC PAFVEAGGRY RRIGQSMDEV AFGRGDSKSS TSVDTSDSLL RQTKPTSSSK SSNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)