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AT5G42050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 0.966
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DCD (Development and Cell Death) domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DCD (Development and Cell Death) domain protein; CONTAINS InterPro DOMAIN/s: Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G27090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFDDeggNOG:ENOG410Y94PEMBL:AY080773EMBL:AY088465EMBL:AY114057EMBL:CP002688EnsemblPlants:AT5G42050
EnsemblPlants:AT5G42050.1entrez:834210GeneID:834210Gramene:AT5G42050.1hmmpanther:PTHR10857hmmpanther:PTHR10857:SF54HOGENOM:HOG000241628
InterPro:IPR013989KEGG:ath:AT5G42050OMA:DNINSNWPfam:PF10539Pfscan:PS51222PhylomeDB:Q8RXN8PROSITE:PS51222
Proteomes:UP000006548RefSeq:NP_568600.1SMART:SM00767STRING:3702.AT5G42050.1TAIR:AT5G42050UniGene:At.21438UniProt:Q8RXN8
Coordinates (TAIR10) chr5:+:16815630..16816932
Molecular Weight (calculated) 39786.10 Da
IEP (calculated) 8.68
GRAVY (calculated) -0.93
Length 349 amino acids
Sequence (TAIR10)
(BLAST)
001: MEYNNNNQQS FWQFSDQLRV QTPNLANLSL NDSIWSTNSV FKERRNLDIA ATTDKNNNQI DYYQKKTTSD NINSNWNWKS SGSNNDMGLG FGPVGSKSTV
101: DLNPIDKFNS PFNDTWKFNS VNVNVNGYSP SSAVNGDFNK GVYTSMKKYG YNVNLKNNNK NKGIDEDHQI QKGGKKNRKN QQNNNNQRNE DDKNNGLDKR
201: FKTLPPAEAL PRNETIGGYI FVCNNDTMEE NLKRQLFGLP PRYRDSVRAI TPGLPLFLYN YSTHQLHGIY EAASFGGTNI ELNAFEDKKC PGESRFPAQV
301: RAITRKVCLP LEEDSFRPIL HHYDGPKFRL ELSVPEVLSL LDIFADQNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)