AT5G42010.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.970 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G64610.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:16802280..16804757 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79085.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.68 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||
| Length | 709 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTRGNEEEE DWFSDAREEV SSVSDCNSEV ADDFVQATGD LDLWTMNPES VTNRRQKFFQ SMGFSFKKRD FDLDLDLLGD SSSDHIPVSK QLTSVSETDH 101: EEEEKEEKLL RNESTSSGSS VSSFSTASLA EAFSFRGSFQ NRAKNIDDQI LLTRDYSSNS SSIAEGLSES DSSRFDSYGD LPNSPMSRYE ESPKKGAKGW 201: LKKLGVLTHV LDKTEECTDG ESTRSSIRRQ LTRVQSFKKQ FKELSSLCVG QEFSAHDGSI VVMKFSHDGK YLASAGEDCV VRVWNIIEDE RRDNEFEVAE 301: SDSSCVYFGM NDKSQIEPLK TENEKIEKSR GLLRKKSEST CAVLPSKVFS ISETPQHEFR GHTGEILDLS WSEKGFLLSS SVDETVRLWR VGSSDECIRV 401: FSHKSFVTCV AFNPVDDNYF ISGSIDGKVR IWDVSQFRVV DYTDIRQIVT ALCYRPDGKG AVVGSMTGEC RFYHTTDNQL QLDRDISLHG KKKVPNKRIT 501: GFQFFPGDSD KVMVTSADSQ IRIICGVDTI CKLKKASSLR TTLMSPTFAS FTSDGKHIVS TIEESGIHVW DFSQPNKKAS SQKPKTIRSY EGFLSRNVSV 601: AIPWLGQGKE DSIIADLEKS FAHFPVPLDY FSPMKGATTW PEEKLGVVAG TAAAAVSATV SSRSKLRLLK SVCQNVHGST PHLWGLVIVT ATWDGSIRVF 701: HNYGLPIRV |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)