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AT5G41970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Metal-dependent protein hydrolase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Metal-dependent protein hydrolase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent protein hydrolase (InterPro:IPR003226); BEST Arabidopsis thaliana protein match is: Metal-dependent protein hydrolase (TAIR:AT3G49320.1); Has 677 Blast hits to 672 proteins in 331 species: Archae - 0; Bacteria - 213; Metazoa - 146; Fungi - 144; Plants - 55; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4286eggNOG:KOG2948EMBL:CP002688EnsemblPlants:AT5G41970
EnsemblPlants:AT5G41970.1entrez:834202GeneID:834202GO:GO:0005739
GO:GO:0005829GO:GO:0016787Gramene:AT5G41970.1hmmpanther:PTHR11215
hmmpanther:PTHR11215:SF3InParanoid:F4K000InterPro:IPR003226iPTMnet:F4K000
KEGG:ath:AT5G41970OMA:CVFVHAAPANTHER:PTHR11215PaxDb:F4K000
Pfam:PF03690PRIDE:F4K000Proteomes:UP000006548RefSeq:NP_199012.2
STRING:3702.AT5G41970.1TAIR:AT5G41970UniGene:At.7786UniProt:F4K000
Coordinates (TAIR10) chr5:+:16791198..16792961
Molecular Weight (calculated) 42301.70 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.29
Length 373 amino acids
Sequence (TAIR10)
(BLAST)
001: MMFSVTKGLI RNLALFQVRL PPLVAAVMAP SSVVRVYSTA TSPSPSEISV KKVGTHNGSF HCDEALGCFM IRLVDKFSGA DIVRSRDPKI LAELDAVLDV
101: GGVYDPEHDR YDHHQKGFEE VFGHGFNTKL SSAGLVYKHF GKEIIAKELN VEQDHPDVLR LFLAVYKSFM EAIDAVDNGI NRYDTDQPPR YVNNTHLSPR
201: VGRLNLDWID PDQSQEKENE AFQRAMALAG KEFLESVQFH ARSWLPARSI VMQCLEERFK TDPSGEIMIL DRFCPWKLHL FELEQEMKIE PLIKYVIYQD
301: ERAKQWRVQA VAVAPDRFEN RKPLPEKWRG LRDEELSKAA EIPGCVFVHM SGFIGGNQSY DGALSMAQTA LTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)