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AT5G41910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Mediator complex, subunit Med10
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MED10A; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med10 (InterPro:IPR019145); BEST Arabidopsis thaliana protein match is: Mediator complex, subunit Med10 (TAIR:AT1G26665.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19447DNASU:834196eggNOG:ENOG4111QA2eggNOG:KOG3046
EMBL:AB017067EMBL:BT002847EMBL:BT004431EMBL:CP002688
EnsemblPlants:AT5G41910EnsemblPlants:AT5G41910.1entrez:834196GeneID:834196
GO:GO:0001104GO:GO:0006351GO:GO:0016592GO:GO:0070847
Gramene:AT5G41910.1hmmpanther:PTHR13345HOGENOM:HOG000243259InParanoid:Q9FHZ2
IntAct:Q9FHZ2InterPro:IPR019145iPTMnet:Q9FHZ2KEGG:ath:AT5G41910
KO:K15151OMA:QVILMERPaxDb:Q9FHZ2Pfam:PF09748
Pfam:Q9FHZ2PhylomeDB:Q9FHZ2PRIDE:Q9FHZ2PRO:PR:Q9FHZ2
Proteomes:UP000006548RefSeq:NP_199006.1STRING:3702.AT5G41910.1TAIR:AT5G41910
tair10-symbols:MED10AUniGene:At.30199UniProt:Q9FHZ2
Coordinates (TAIR10) chr5:-:16778160..16779032
Molecular Weight (calculated) 20727.80 Da
IEP (calculated) 5.35
GRAVY (calculated) -0.46
Length 186 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQTQNTIAG IGEINGSIKT EINAIATVDD SNEKLNQIIN SNQKILELLH QLKLTVSSFT PASQLHLLQR LNSLVMELDN MAKLSDKCNI QVPIEVLNLI
101: DDGKNPDEFT KDVLNKNCIA KNQVTKGKSD AFKGLRKHLL EELEQAFPDE VDRYRDIRAS YAAEAKRLAQ TQSVLPNGDA KVKSEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)