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AT5G41900.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
extracellular 0.961
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G64670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IPFGeggNOG:ENOG4111I4PEMBL:AB016871EMBL:AK117277
EMBL:BT005385EMBL:CP002688EnsemblPlants:AT5G41900EnsemblPlants:AT5G41900.1
entrez:834195ESTHER:arath-At5g41900Gene3D:3.40.50.1820GeneID:834195
GO:GO:0016787Gramene:AT5G41900.1hmmpanther:PTHR10992hmmpanther:PTHR10992:SF881
HOGENOM:HOG000243550InterPro:IPR000073InterPro:IPR029058KEGG:ath:AT5G41900
MEROPS:S33.A28OMA:VVESCDHPfam:PF00561PhylomeDB:Q9FJ24
PRINTS:PR00111Proteomes:UP000006548RefSeq:NP_199005.1SMR:Q9FJ24
STRING:3702.AT5G41900.1SUPFAM:SSF53474TAIR:AT5G41900UniGene:At.30200
UniProt:Q9FJ24
Coordinates (TAIR10) chr5:+:16769032..16771567
Molecular Weight (calculated) 53648.20 Da
IEP (calculated) 9.87
GRAVY (calculated) -0.17
Length 471 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIARWLNRT VGFFVFALLD IADFLLCYTY KTLDYFLESE RKPCYCSSPP EAKAKTEKII VSERGGYSKV VSLTRSKIHF DEISDTLYSR GPSLLTRLSK
101: LVRSVKCFNY KGLIMRGNVV ESCDHHESKK KISKGKKRLM TLNSTVIEKS STAPRWSDCH CSFCTSWLTS TNRDSLFVKV QQPKDNKKAR DNVVFIHGFV
201: SSSAFWTETL FPNFSDSAKS NYRFIAVDLL GYGRSPKPND SLYTLREHLE MIEKSVISKF KLKTFHIVAH SLGCILALAL AVKHPGAIKS LTLLAPPYYK
301: VPKGVQPAQY VMREVARKEV WPPMQFGASV LSWYEHLGRT IGLVLIKNHQ LIEFVTRLLT LNRMRTYLIE GFLCHTHNGS FHTLHNIIFG SGAKLDSYLD
401: HVRDHVDCDV AIFHGGKDEL IPVECSYSVK SKVPRATVHV IPDKDHITIV VGRQKDFARE LELIWQRTKS T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)