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AT5G41880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA primases;DNA primases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
POLA3; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer, DNA replication; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, small subunit (InterPro:IPR002755), DNA primase, small subunit, eukaryotic/archaeal (InterPro:IPR014052); Has 510 Blast hits to 504 proteins in 249 species: Archae - 95; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 44; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
Protein Annotations
EC:2.7.7.-eggNOG:COG1467eggNOG:KOG2851EMBL:CP002688EnsemblPlants:AT5G41880EnsemblPlants:AT5G41880.1entrez:834193
GeneID:834193GO:GO:0003896GO:GO:1990077Gramene:AT5G41880.1hmmpanther:PTHR10536InParanoid:F4JZZ1InterPro:IPR002755
InterPro:IPR014052iPTMnet:F4JZZ1KEGG:ath:AT5G41880KO:K02684OMA:QYTYPRIPANTHER:PTHR10536PaxDb:F4JZZ1
Pfam:PF01896PRIDE:F4JZZ1ProteinModelPortal:F4JZZ1Proteomes:UP000006548Reactome:R-ATH-113501Reactome:R-ATH-174411Reactome:R-ATH-174430
Reactome:R-ATH-68952Reactome:R-ATH-68962Reactome:R-ATH-69091Reactome:R-ATH-69109Reactome:R-ATH-69166Reactome:R-ATH-69183RefSeq:NP_199003.5
SMR:F4JZZ1STRING:3702.AT5G41880.1SUPFAM:SSF56747TAIR:AT5G41880tair10-symbols:POLA3tair10-symbols:POLA4TIGRfam:TIGR00335
TIGRFAMs:TIGR00335UniGene:At.55312UniProt:F4JZZ1
Coordinates (TAIR10) chr5:+:16761071..16764074
Molecular Weight (calculated) 52070.60 Da
IEP (calculated) 6.00
GRAVY (calculated) -0.49
Length 451 amino acids
Sequence (TAIR10)
(BLAST)
001: MTREETETSG EDMMIDDPKP KIENDFNVHY LRIYYGNLFP YTDIHKWLSY GHDGKHPGCD EYYFGRREFS FTLENDVYLR YKSFKNASLM EAAIKSNFPY
101: KIDIGAVYSV DPDKRHAYAQ SGTNLFTPVE RELVFDIDIT DYDDVRYCCS GADVCSKCWP LMTVAIKVID TSLREDFGFK HILWVFSGRR GVHCWVCDAK
201: ARRLTNEQRS AVAEYFRVYK GNENNAKKVD LMGHSLHPFL ARSYVDFIKS FFEGELQATQ SIFSSKEKYE KILGMITDED IQADLRGKWE NSARSSLSEE
301: ATSLLRWEQL KKALQSKRNK ALSLRTCVEE IVFTFTYPRI DLEVSKQMNH LLKAPFCVHP KTGRVCVPID PNNCDEFDPL AVPTLSQLIE EINSGGLRMD
401: VDDDDSDSSL LGKSIKFFRS SFLEPLLKSC KEEIESSYKT KIAKTKDSFS W
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)