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AT5G41870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G23820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G41870-MONOMERCAZy:GH28eggNOG:COG5434eggNOG:ENOG410IG1AEMBL:AB016871EMBL:BT015129EMBL:CP002688
EnsemblPlants:AT5G41870EnsemblPlants:AT5G41870.1entrez:834192Gene3D:2.160.20.10GeneID:834192GO:GO:0004650GO:GO:0005576
GO:GO:0005975GO:GO:0016829GO:GO:0071555Gramene:AT5G41870.1hmmpanther:PTHR31339hmmpanther:PTHR31339:SF3HOGENOM:HOG000238076
InterPro:IPR000743InterPro:IPR006626InterPro:IPR011050InterPro:IPR012334KEGG:ath:AT5G41870OMA:PITCSGIPfam:PF00295
PhylomeDB:Q9FJ27Proteomes:UP000006548RefSeq:NP_199002.1SMART:SM00710SMR:Q9FJ27SUPFAM:SSF51126TAIR:AT5G41870
UniGene:At.27978UniGene:At.43191UniProt:Q9FJ27
Coordinates (TAIR10) chr5:-:16758817..16760490
Molecular Weight (calculated) 48646.70 Da
IEP (calculated) 7.37
GRAVY (calculated) -0.18
Length 449 amino acids
Sequence (TAIR10)
(BLAST)
001: MKISQAPISV FVLFLLSTVL PHHLSLGAPI TCSGIVPMKH RNEMLSISDF GAVGDGKTLN TKAFNSAIDR IRNSNNSNEG TLLYVPRGVY LTQSFNLTSH
101: MTLYLADGAV IKAVQDTEKW PLTDPLPSYG RGREHPGRRY ISFIHGDGLN DVVITGRNGT IDGQGEPWWN MWRHGTLKFT RPGLIEFNNS TNILVSHVVL
201: QNSPFWTLHP VYCSNVVVHH VTILAPTDSY NTDGIDPDSS SNVCIEDSYI STGDDLVAVK SGWDEYGIAY NRPSRDITIR RITGSSPFAG IAIGSETSGG
301: IQNVTVENIT LYNSGIGIHI KTNIGRGGSI QGITISGVYL EKVRTGIKIS GDTGDHPDDK FNTSALPIVR GITIKNVWGI KVERAGMVQG LKDSPFTNLC
401: FSNVTLTGTK RSPIWKCSDV VGAADKVNPT PCPELSATTQ QGGSCENQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)