suba logo
AT5G41780.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.562
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : myosin heavy chain-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
myosin heavy chain-related; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTV4eggNOG:ENOG41107HDEMBL:AB016871EMBL:CP002688
EMBL:DQ447029EnsemblPlants:AT5G41780EnsemblPlants:AT5G41780.1entrez:834183
GeneID:834183Gramene:AT5G41780.1hmmpanther:PTHR18937hmmpanther:PTHR18937:SF216
IntAct:Q9FJ36KEGG:ath:AT5G41780ncoils:CoilOMA:MKHEVET
PhylomeDB:Q9FJ36Proteomes:UP000006548RefSeq:NP_198993.1TAIR:AT5G41780
UniGene:At.55308UniProt:Q9FJ36
Coordinates (TAIR10) chr5:+:16723075..16724833
Molecular Weight (calculated) 62739.50 Da
IEP (calculated) 7.86
GRAVY (calculated) -0.91
Length 537 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEAKTEVEK KVSILLKFIQ NKNKIPKVTK KELVGIVEDL HKQCQLLYSV FDDFGTDGRK GKLGTASSSR SSSDLDYYSS EEVEISADNV SDTLSSDYDV
101: MLRKLQETEL RNEDLERQVS NLKQETVFLR DQNMEVAGDI EGKRNEDREH LKGLMTKLEA ALLCNQKREL EMELVKKTNQ VSETQMRLKR LEEETEKRAK
201: AEMKIVKEKE ALWNKVQKLE AGVDTFRKKR KEFNEEMKSK ITENQKLHTK IAVIDEIEDK SKKLEYQVKE QEDIIQRLSM EIKDQKKLLK EQKDAIDKFS
301: EDQKLMKRWS FGSKLNTNLL EKKMEELAED FRMKMEDHIR ILHRRIHVAE QIHLESKSSY IKTRDNTQTE ENRGNRAVSE TQFKKIKEMV EQGLAGPEMA
401: IKKLEESGEL GNRVTRLAKE IDSARKWVKE KDNNMKHEVE TLEAKLECRE AQESLLKEKL SKLEAKLAEE GTEKLSLSKA MRKIKKLEIN VKEKEFELLS
501: LGEGKREAIR QLCVLVDYQR CRYDDLKTSI CHVALQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)