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AT5G41600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.969
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : VIRB2-interacting protein 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VIRB2-interacting protein 3 (BTI3); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulan like protein B3 (TAIR:AT1G64090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19413eggNOG:ENOG410XPKHeggNOG:KOG1792EMBL:AB005233EMBL:AY035169EMBL:AY057638EMBL:AY150449
EMBL:CP002688EnsemblPlants:AT5G41600EnsemblPlants:AT5G41600.1entrez:834162GeneID:834162Genevisible:Q9FFS0GO:GO:0005783
GO:GO:0005789GO:GO:0005886GO:GO:0009506GO:GO:0071458GO:GO:0071782GO:GO:0071786Gramene:AT5G41600.1
hmmpanther:PTHR10994hmmpanther:PTHR10994:SF70HOGENOM:HOG000237479InParanoid:Q9FFS0IntAct:Q9FFS0InterPro:IPR003388iPTMnet:Q9FFS0
KEGG:ath:AT5G41600OMA:DHKHEESPaxDb:Q9FFS0Pfam:PF02453Pfam:Q9FFS0Pfscan:PS50845PhylomeDB:Q9FFS0
PRIDE:Q9FFS0PRO:PR:Q9FFS0PROSITE:PS50845ProteinModelPortal:Q9FFS0Proteomes:UP000006548RefSeq:NP_198975.1STRING:3702.AT5G41600.1
TAIR:AT5G41600tair10-symbols:BTI3tair10-symbols:RTNLB4TMHMM:TMhelixUniGene:At.8344UniProt:Q9FFS0
Coordinates (TAIR10) chr5:+:16636230..16637472
Molecular Weight (calculated) 28950.40 Da
IEP (calculated) 9.57
GRAVY (calculated) 0.02
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEDHKHEES ILEKIVEKIH GHGDSSSLSD SDDDKKSTSS SSSSFKSKIY RLFGREKPVH KVLGGGKPAD IFLWRNKKVS GGVLGAVTAS WVLFELFEYH
101: LLAFLCHFAI FALAALFLWS NACTFIHKST PHIPEVHIPE DPILQLVSGL RIEINRGLTL LRNIASGKDV KKFILVIAGL WVLSIIGSCY NFLTLFYTAT
201: VLLFTIPVLY EKYEDKVDAY GEKAMREIKK QYAVLDEKVL RKVISKIPRG ALNKKKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)