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AT5G41460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.639
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF604)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF604); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G23490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
CAZy:GT31eggNOG:ENOG410YRJGeggNOG:KOG2246EMBL:AB006707EMBL:BT015815EMBL:BT020528EMBL:CP002688
EMBL:KJ138651EnsemblPlants:AT5G41460EnsemblPlants:AT5G41460.1entrez:834147GeneID:834147GO:GO:0016021GO:GO:0016740
Gramene:AT5G41460.1hmmpanther:PTHR10811hmmpanther:PTHR10811:SF11HOGENOM:HOG000239947InterPro:IPR006740KEGG:ath:AT5G41460OMA:ISNSRAC
Pfam:PF04646PhylomeDB:Q9FN55Proteomes:UP000006548RefSeq:NP_198961.1SUPFAM:SSF101447TAIR:AT5G41460TMHMM:TMhelix
UniGene:At.6489UniProt:Q9FN55
Coordinates (TAIR10) chr5:-:16589724..16592197
Molecular Weight (calculated) 60013.80 Da
IEP (calculated) 9.94
GRAVY (calculated) -0.31
Length 524 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLNNQKDPA EKLMWERTLS GSGSPTRPVS KLMVTLLLLV SATYVVYTLK LISNSRACQV EPFSAVVRRL NDIVNSSQPL ILFHTNQTAV IKSYASPPPS
101: PPPPPPPPQT GFQHVVFGIA ASARLWKQRK EYIKIWYKPN QMRSYVWLEK PVTEEDEEDE ISLPPVKISG DTSKFPYKNK QGHRSAIRIS RIVTETLKLG
201: LKDVRWFVMG DDDTVFVAEN LIRVLRKYDH NQMYYIGSLS ESHLQNIYFS YGMAYGGGGF AISYPLAVAL SKMQDRCIKR YPALYGSDDR MQACMAELGV
301: PLTKELGFHQ YDVYGNLFGL LAAHPVAPLV TLHHLDVVEP IFPNMTRVDA LKHLQVPAKL DSAGLMQQSI CYDKRRKWTV SVSWGFAVQI FRGIFSAREI
401: EMPSRTFLNW YRRADYTAYA FNTRPVSRHP CQKPFVFYMT STRVHRVTNM TVSRYEIHRV AHPECRWKMA NPSDIKTVIV YKKPDPHLWD RSPRRNCCRV
501: KSKKNNTLEI SVAVCKEGEV VEVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)