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AT5G41400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.941
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G63840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1427-MONOMEReggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AB006707
EMBL:BT002979EMBL:BT004422EMBL:CP002688EnsemblPlants:AT5G41400
EnsemblPlants:AT5G41400.1entrez:834142Gene3D:3.30.40.10GeneID:834142
GO:GO:0008270Gramene:AT5G41400.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF130
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT5G41400KO:K16281
OMA:CLHEFENPfam:PF13639Pfscan:PS50089PhylomeDB:Q9FN60
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_198956.1SMART:SM00184
SMR:Q9FN60STRING:3702.AT5G41400.1SUPFAM:SSF57850TAIR:AT5G41400
UniGene:At.30234UniProt:Q9FN60
Coordinates (TAIR10) chr5:-:16569584..16570114
Molecular Weight (calculated) 20031.00 Da
IEP (calculated) 4.97
GRAVY (calculated) 0.01
Length 176 amino acids
Sequence (TAIR10)
(BLAST)
001: MGYPVGYTEL LLPRIFLHLL SLLGLIRTLI DTGFRILGLP DFLESDPVSS SSSWLEPPYM STAAHHHQES SFFFPVAARL AGEILPVIRF SELTRPGFGS
101: GSDCCAVCLH EFENDDEIRR LTNCQHIFHR SCLDRWMMGY NQMTCPLCRT PFISDELQVA FNQRVWSESE LLAESN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)