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AT5G41350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger B1A (TAIR:AT4G00335.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AY048293EMBL:AY143828EMBL:CP002688EnsemblPlants:AT5G41350EnsemblPlants:AT5G41350.1
entrez:834137Gene3D:3.30.40.10GeneID:834137GO:GO:0005739GO:GO:0008270Gramene:AT5G41350.1hmmpanther:PTHR22937
hmmpanther:PTHR22937:SF24IntAct:Q94AB7InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT5G41350OMA:KELDCKAPfam:PF13639
Pfscan:PS50089PhylomeDB:Q94AB7PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_568590.1SMART:SM00184SMR:Q94AB7
STRING:3702.AT5G41350.1SUPFAM:SSF57850TAIR:AT5G41350UniGene:At.6481UniProt:Q94AB7
Coordinates (TAIR10) chr5:-:16542026..16543092
Molecular Weight (calculated) 23194.90 Da
IEP (calculated) 3.99
GRAVY (calculated) -0.35
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGCCCCSSS RRADVDNGPA YYYYPRATEE RVPLSSAHNR TSSAISTGVV VVDTNLETSS PDAYIPPPLP TPFDVPIGIP QTPASGEEAT CVDIREVSVD
101: SANTESAQET VDGITLGVPT TCSHKETDSK IQTEIDLEST EEIDPKLSKA VFIPIEEEED CPICLEEYDI ENPKLVAKCD HHFHLACILE WMERSETCPV
201: CNKEMVFDST LD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)