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AT5G41340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.822
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ubiquitin conjugating enzyme 4
Curator
Summary (TAIR10)
Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated.
Computational
Description (TAIR10)
ubiquitin conjugating enzyme 4 (UBC4); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Ubiquitin-conjugating enzyme (InterPro:IPR015581); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 5 (TAIR:AT1G63800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G41340-MONOMERBioGrid:19387EC:2.3.2.23eggNOG:ENOG410XRC5eggNOG:KOG0416EMBL:AB006707EMBL:AY065360
EMBL:AY096587EMBL:CP002688EMBL:DQ027019EMBL:L19354EnsemblPlants:AT5G41340EnsemblPlants:AT5G41340.1entrez:834136
Gene3D:3.10.110.10GeneID:834136Genevisible:P42748GO:GO:0004842GO:GO:0005524GO:GO:0005737GO:GO:0006511
GO:GO:0031625GO:GO:0061630Gramene:AT5G41340.1hmmpanther:PTHR24067hmmpanther:PTHR24067:SF129HOGENOM:HOG000233452InParanoid:P42748
IntAct:P42748InterPro:IPR000608InterPro:IPR016135InterPro:IPR023313KEGG:ath:AT5G41340KO:K06689OMA:EMINIFE
PaxDb:P42748Pfam:P42748Pfam:PF00179Pfscan:PS50127PhylomeDB:P42748PIR:S43784PRIDE:P42748
PRO:PR:P42748PROSITE:PS00183PROSITE:PS50127ProteinModelPortal:P42748Proteomes:UP000006548RefSeq:NP_568589.1scanprosite:PS00183
SMR:P42748STRING:3702.AT5G41340.1SUPFAM:SSF54495TAIR:AT5G41340tair10-symbols:ATUBC4tair10-symbols:UBC4UniGene:At.28656
UniPathway:UPA00143UniProt:P42748
Coordinates (TAIR10) chr5:-:16538296..16539956
Molecular Weight (calculated) 21298.80 Da
IEP (calculated) 3.99
GRAVY (calculated) -0.73
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSPSKRREM DMMKLMMSDY KVETINDGMQ EFYVEFNGPK DSLYQGGVWK IRVELPDAYP YKSPSVGFIT KIYHPNVDEL SGSVCLDVIN QTWSPMFDLV
101: NVFETFLPQL LLYPNPSDPL NGEAAALMMR DRPAYEQRVK EYCEKYAKPG EGSEDKSSDE ELSEEEYGSD NEDDDDDDVA IAGKPDP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)