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AT5G41315.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a basic helix loop helix domain protein that interacts with GL1 in trichome development.
Computational
Description (TAIR10)
GLABROUS 3 (GL3); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G63650.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:19384eggNOG:ENOG410IKXPeggNOG:ENOG410Z2WKEMBL:AB006707EMBL:AF246291EMBL:CP002688EnsemblPlants:AT5G41315
EnsemblPlants:AT5G41315.1entrez:834133Gene3D:4.10.280.10GeneID:834133GO:GO:0001708GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0007275GO:GO:0009957GO:GO:0010091Gramene:AT5G41315.1hmmpanther:PTHR11514
hmmpanther:PTHR11514:SF37HOGENOM:HOG000237985InParanoid:Q9FN69IntAct:Q9FN69InterPro:IPR011598InterPro:IPR025610KEGG:ath:AT5G41315
ncoils:CoilOMA:FMTERITPaxDb:Q9FN69Pfam:PF00010Pfam:PF14215Pfam:Q9FN69Pfscan:PS50888
PhylomeDB:Q9FN69PRIDE:Q9FN69PRO:PR:Q9FN69PROSITE:PS50888ProteinModelPortal:Q9FN69Proteomes:UP000006548RefSeq:NP_680372.1
SMART:SM00353SMR:Q9FN69STRING:3702.AT5G41315.1SUPFAM:SSF47459TAIR:AT5G41315tair10-symbols:GL3tair10-symbols:MYC6.2
UniGene:At.27204UniProt:Q9FN69
Coordinates (TAIR10) chr5:+:16529457..16532866
Molecular Weight (calculated) 70543.10 Da
IEP (calculated) 5.93
GRAVY (calculated) -0.43
Length 637 amino acids
Sequence (TAIR10)
(BLAST)
001: MATGQNRTTV PENLKKHLAV SVRNIQWSYG IFWSVSASQS GVLEWGDGYY NGDIKTRKTI QASEIKADQL GLRRSEQLSE LYESLSVAES SSSGVAAGSQ
101: VTRRASAAAL SPEDLADTEW YYLVCMSFVF NIGEGMPGRT FANGEPIWLC NAHTADSKVF SRSLLAKSAA VKTVVCFPFL GGVVEIGTTE HITEDMNVIQ
201: CVKTSFLEAP DPYATILPAR SDYHIDNVLD PQQILGDEIY APMFSTEPFP TASPSRTTNG FDQEHEQVAD DHDSFMTERI TGGASQVQSW QLMDDELSNC
301: VHQSLNSSDC VSQTFVEGAA GRVAYGARKS RVQRLGQIQE QQRNVKTLSF DPRNDDVHYQ SVISTIFKTN HQLILGPQFR NCDKQSSFTR WKKSSSSSSG
401: TATVTAPSQG MLKKIIFDVP RVHQKEKLML DSPEARDETG NHAVLEKKRR EKLNERFMTL RKIIPSINKI DKVSILDDTI EYLQELERRV QELESCREST
501: DTETRGTMTM KRKKPCDAGE RTSANCANNE TGNGKKVSVN NVGEAEPADT GFTGLTDNLR IGSFGNEVVI ELRCAWREGV LLEIMDVISD LHLDSHSVQS
601: STGDGLLCLT VNCKHKGSKI ATPGMIKEAL QRVAWIC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)