AT5G41100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G26910.2); Has 1503 Blast hits to 1197 proteins in 220 species: Archae - 4; Bacteria - 108; Metazoa - 481; Fungi - 318; Plants - 186; Viruses - 39; Other Eukaryotes - 367 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16447429..16450610 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 64927.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.25 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||
| Length | 586 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMKASFGRLR RFALPKADAI DIGELFPTAQ IEGLARAAKD MQDMREGYDR LLEVAAAMAN SAYEFSESLG EMGSCLEQIA PHNDQESGGI LLMLGKVQFE 101: LKKLVDTYRS QIFKTITRPS ESLLSDLRTV EDMKQQCEEK RDVVKHMLME HVKDKVQVKG TKGERLIRRQ LETARDELQD EATLCIFRLK SLKEGQARSL 201: LTQAARHHTA QMHMFFAGLK SLEAVEQHVR IAADRQHIDC VLSDPGNEMD CSEDNDDDDR LVNRDGELSF DYITSEQRVE VISTPHGSMK MDDTDLSFQR 301: PSPAGSATVN ADPREEHSVS NRDRRTSSHS APLFPDKKAD LADRSMRQMT PSANAYILPT PVDSKSSPIF TKPVTQTNHS ANLWHSSPLE PIKTAHKDAE 401: SNLYSRLPRP SEHAFSGPLK PSSTRLPVPV AVQAQSSSPR ISPTASPPLA SSPRINELHE LPRPPGQFAP PRRSKSPGLV GHSAPLTAWN QERSNVVVST 501: NIVASPLPVP PLVVPRSYSI PSRNQRAMAQ QPLPERNQNR VASPPPLPLT PASLMNLRSL SRSHVGEVAQ SGLIRGNGNK TNLLYL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)