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AT5G41080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.661
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLC-like phosphodiesterases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: senescence-related gene 3 (TAIR:AT3G02040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-450-MONOMERDNASU:834110EC:3.1.4.46eggNOG:COG0584eggNOG:KOG2421EMBL:AB010072EMBL:AK117378
EMBL:BT030021EMBL:CP002688EnsemblPlants:AT5G41080EnsemblPlants:AT5G41080.1entrez:834110ExpressionAtlas:Q9FLM1Gene3D:3.20.20.190
GeneID:834110Genevisible:Q9FLM1GO:GO:0005623GO:GO:0006071GO:GO:0008889GO:GO:0030643GO:GO:0046475
hmmpanther:PTHR22958hmmpanther:PTHR22958:SF10InParanoid:Q9FLM1InterPro:IPR017946InterPro:IPR030395KEGG:ath:AT5G41080OMA:ELQSTYP
PaxDb:Q9FLM1Pfam:PF03009Pfam:Q9FLM1Pfscan:PS51704PhylomeDB:Q9FLM1PRIDE:Q9FLM1PRO:PR:Q9FLM1
PROSITE:PS51704ProteinModelPortal:Q9FLM1Proteomes:UP000006548RefSeq:NP_198924.1SMR:Q9FLM1STRING:3702.AT5G41080.1SUPFAM:SSF51695
TAIR:AT5G41080UniGene:At.49114UniProt:Q9FLM1
Coordinates (TAIR10) chr5:+:16441858..16443835
Molecular Weight (calculated) 42018.20 Da
IEP (calculated) 4.58
GRAVY (calculated) -0.18
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MALRTVLVSD VPSLPDSVYG LSEGLELSKP TSFRLPGFSV IGHRGIGMNV LQSSDRRARG VKENSILSFN SAAKYPIDFI EFDVQVTKDD CPVIFHDDFI
101: YSEENGIVNE SRVTDLSLSE FLLYGPQKET EKIGKTLMRK SKEGKVLKWD VDLDDSLCTL QEAFEQVEQT LGFNIELKFD DQTVYEREFL VHILRSVLQV
201: VSNYAKDRPV IFSSFQPDAA KLVRELQSTY PVFFLTDAGN EIHNDERRNS LEEAIQVCLE GGLQGIVSEV KGVFRNPAAI SKIKESNLSL LTYGKLNNVG
301: EAVYMQYVMG IDGVIVDFVE EIIESTTRMM IRPPPSSSPL PSPSKDDDVA ITRPEFSQKE ISFLLKLLSQ LIQH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)