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AT5G41070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : dsRNA-binding protein 5
Curator
Summary (TAIR10)
Encodes a double-stranded RNA binding protein.
Computational
Description (TAIR10)
dsRNA-binding protein 5 (DRB5); FUNCTIONS IN: double-stranded RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: dsRNA-binding protein 3 (TAIR:AT3G26932.2); Has 571 Blast hits to 516 proteins in 134 species: Archae - 0; Bacteria - 166; Metazoa - 100; Fungi - 5; Plants - 279; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
BioGrid:19360eggNOG:ENOG410IGABeggNOG:ENOG410ZZN4EMBL:AB010072EMBL:AK117808EMBL:BT009653EMBL:CP002688
EnsemblPlants:AT5G41070EnsemblPlants:AT5G41070.1entrez:834109Gene3D:3.30.160.20GeneID:834109Genevisible:Q8GY79GO:GO:0003725
Gramene:AT5G41070.1hmmpanther:PTHR10910hmmpanther:PTHR10910:SF110HOGENOM:HOG000243232InParanoid:Q8GY79IntAct:Q8GY79InterPro:IPR014720
KEGG:ath:AT5G41070OMA:LRWINLLPaxDb:Q8GY79Pfam:PF00035Pfam:Q8GY79Pfscan:PS50137PhylomeDB:Q8GY79
PRIDE:Q8GY79PRO:PR:Q8GY79PROSITE:PS50137ProteinModelPortal:Q8GY79Proteomes:UP000006548RefSeq:NP_198923.2SMART:SM00358
SMR:Q8GY79STRING:3702.AT5G41070.1SUPFAM:SSF54768TAIR:AT5G41070tair10-symbols:DRB5UniGene:At.30254UniProt:Q8GY79
Coordinates (TAIR10) chr5:+:16438547..16439916
Molecular Weight (calculated) 43637.50 Da
IEP (calculated) 9.82
GRAVY (calculated) -0.66
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHAA AEVSLNVLSS RVPSKSLTAK ILDETGIYKN LLQETAHRAG
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)