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AT5G40980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF 3339)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF 3339); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT3G27027.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB010072EMBL:BT011596EMBL:BT012231EMBL:CP002688EnsemblPlants:AT5G40980EnsemblPlants:AT5G40980.1entrez:834100
GeneID:834100GO:GO:0016021GO:GO:0031225Gramene:AT5G40980.1hmmpanther:PTHR33128hmmpanther:PTHR33128:SF10HOGENOM:HOG000237395
InterPro:IPR021775KEGG:ath:AT5G40980OMA:GIHIHADPfam:PF11820PhylomeDB:Q9FLN1Proteomes:UP000006548RefSeq:NP_198914.1
STRING:3702.AT5G40980.1TAIR:AT5G40980TMHMM:TMhelixUniGene:At.30260UniGene:At.68530UniProt:Q9FLN1
Coordinates (TAIR10) chr5:-:16414877..16415086
Molecular Weight (calculated) 7608.77 Da
IEP (calculated) 7.62
GRAVY (calculated) 1.39
Length 69 amino acids
Sequence (TAIR10)
(BLAST)
1: MSADWGPVIV AVALFILLSP GLLFQLPART RVMEFGNMST SGISILVHAI IYFCILTILI IAIQIHIHF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)