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AT5G40960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF 3339)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF 3339); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G08391.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J74DeggNOG:ENOG410ZEA3EMBL:AB010072EMBL:AY085889EMBL:BT024518EMBL:CP002688EnsemblPlants:AT5G40960
EnsemblPlants:AT5G40960.1entrez:834098GeneID:834098GO:GO:0016021GO:GO:0031225Gramene:AT5G40960.1hmmpanther:PTHR33128
hmmpanther:PTHR33128:SF6HOGENOM:HOG000237395InterPro:IPR021775KEGG:ath:AT5G40960OMA:QFPGKESPfam:PF11820PhylomeDB:Q9FLN3
Proteomes:UP000006548RefSeq:NP_198912.1STRING:3702.AT5G40960.1TAIR:AT5G40960TMHMM:TMhelixUniGene:At.64266UniProt:Q9FLN3
Coordinates (TAIR10) chr5:-:16412745..16412951
Molecular Weight (calculated) 7479.46 Da
IEP (calculated) 7.79
GRAVY (calculated) 1.17
Length 68 amino acids
Sequence (TAIR10)
(BLAST)
1: MHDWAAPLIA SALFAFLSPG LILQFPGKES PVGFMNMKTT VASIFVHTVL YGLFLILFLV VLNVHVYA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)