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AT5G40950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosomal protein large subunit 27
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ribosomal protein large subunit 27 (RPL27); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: thylakoid, ribosome, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27 (InterPro:IPR001684), Ribosomal protein L27, conserved site (InterPro:IPR018261); BEST Arabidopsis thaliana protein match is: Ribosomal protein L27 family protein (TAIR:AT2G16930.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19348eggNOG:COG0211eggNOG:KOG4600EMBL:AB010072EMBL:AY046039EMBL:AY117267EMBL:CP002688
EnsemblPlants:AT5G40950EnsemblPlants:AT5G40950.1entrez:834097EvolutionaryTrace:Q9FLN4GeneID:834097Genevisible:Q9FLN4GO:GO:0003735
GO:GO:0005840GO:GO:0006412GO:GO:0009507GO:GO:0009570GO:GO:0009579GO:GO:0009735GO:GO:0009941
Gramene:AT5G40950.1HAMAP:MF_00539hmmpanther:PTHR15893HOGENOM:HOG000111610InParanoid:Q9FLN4InterPro:IPR001684InterPro:IPR018261
KEGG:ath:AT5G40950KO:K02899ncoils:CoilOMA:YFRMRREPANTHER:PTHR15893PaxDb:Q9FLN4Pfam:PF01016
Pfam:Q9FLN4PhylomeDB:Q9FLN4PRIDE:Q9FLN4PRINTS:PR00063PRO:PR:Q9FLN4ProDom:PD003114PROSITE:PS00831
ProteinModelPortal:Q9FLN4Proteomes:UP000006548RefSeq:NP_198911.1scanprosite:PS00831SMR:Q9FLN4STRING:3702.AT5G40950.1SUPFAM:SSF110324
TAIR:AT5G40950tair10-symbols:RPL27TIGRfam:TIGR00062TIGRFAMs:TIGR00062UniGene:At.6581UniProt:Q9FLN4
Coordinates (TAIR10) chr5:+:16410866..16411845
Molecular Weight (calculated) 21738.10 Da
IEP (calculated) 10.61
GRAVY (calculated) -0.50
Length 198 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMATSMSLN LIGAFKGLSL SSTSSFLRGD LSFSPKTSFT VTLPLENLQA PIPLTIESAH KKGAGSTKNG RDSPGQRLGV KIYGDQVAKP GAIIVRQRGT
101: KFHAGKNVGI GKDHTIFSLI DGLVKFEKFG PDRKKISVYP REIVPENPNS YRARKRENFR LQREKKKARR ENYSYTLPTP ELVLASASVD DAEANPEC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)