AT5G40910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.980 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16395507..16399129 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 124321.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1104 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAFSSPSDFK RYHVFSSFHG PDVRSGFLSH LHNHFESKGI TPFKDQEIER GHTIGPELIQ AIRESRVSIV VLSEKYASSC WCLDELVEIL KCKEASGQVV 0101: MTIFYKVDPS DVRKQRGDFG STFKKTCEGK TWIVKQRWIK ALEYIATVAG EHSLSWANEA ELIQKIATDV SNKLNLTPSR DFEGMVGLEA HLTKLDSFLC 0201: LESDDVKMIG IWGPAGIGKT TIARALFNQL STGFRLSCFM GTIDVNDYDS KLCLQNKLLS KILNQKDMKI HHLGAIEEWL HNQRVLIVLD DVDDLEQLEV 0301: LAKESSWFGH GSRIIVSLND RKILKAHGIN DIYDVDFPSE EEALEILCLS AFKQNSPQDG FEEVAKRVVE LCGKLPLGLR VVGSSFYGES EDEWRIQLYG 0401: IETNLDRKIE NVLRVGYDKL SERHQSLFLH IACFFNHKSV DYVTTMLADS TLDVENGLKT LAAKSLVSTN GWITMHCLLQ QLGRQVVVQQ GDPGKRQFLV 0501: EAKEIRDVLA NETGTESVIG ISFDISKIET LSISKRAFNR MRNLKFLNFY NGSVSLLEDM EYLPRLRLLY WGSYPRKSLP LTFKPECLVE LYMGFSKLEK 0601: LWGGIQPLTN LKKINLGYSS NLKEIPNLSK ATNLKTLTLT GCESLVEIPS SIWNLQKLEM LYASGCIKLQ VIPTNINLAS LEEVNMSNCS RLRSFPDISS 0701: NIKRLYVAGT MIKEFPASIV GHWCRLDFLQ IGSRSLKRLT HVPESVTHLD LRNSDIKMIP DCVIGLPHLV SLLVENCTKL VSIQGHSPSL VTLFADHCIS 0801: LKSVCCSFHG PISKLMFYNC LKLDKESKRG IIQQSGNKSI CLPGKEIPAE FTHQTIGNLI TISLAPGCEE AYSTFSRFKA CLLLSPIKNF AFNKINCFLR 0901: SKGVEISRTT ESIYPFVSGG SLSEHLFIFC GDLFPEENRS LMDVTPNEIL FDFSSSDVEI VECGVKIFLS SGIEVGYCET GGNRNHHIDG EAEAFKVTQV 1001: ENSKHTGHWS WLRKLRLGKK KMKNNKTELS SRPVSGFSDL TRGIFIRYQE PEAVELTKDE RITDLSSLLC IGSLVVCFFL SVFFGQPLVV SVLLLFSCFF 1101: LQMQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)