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AT5G40770.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Predictors External Curations
AmiGO : mitochondrion 11743114
AmiGO : mitochondrion 11743115
AmiGO : mitochondrion 14671022
AmiGO : mitochondrion 17883375
TAIR : vacuole 15539469
TAIR : mitochondrion 15276431
TAIR : plasma membrane 15060130
TAIR : mitochondrion 11743115
TAIR : nucleus 15496452
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30865669 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24727099 (2014): mitochondrion
  • PMID:24124904 (2013): plastid
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22968828 (2012): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22540835 (2012): mitochondrion
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21472856 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:18189341 (2008): mitochondrion
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15496452 (2005): nucleus
  • PMID:15276431 (2004): mitochondrion
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15060130 (2004): plasma membrane
  • PMID:14671022 (2004): mitochondrion
  • PMID:12970493 (2003): mitochondrion
  • PMID:11743115 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : prohibitin 3
Curator
Summary (TAIR10)
prohibitin 3
Computational
Description (TAIR10)
prohibitin 3 (PHB3); INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: prohibitin 4 (TAIR:AT3G27280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19328eggNOG:COG0330eggNOG:KOG3083EMBL:AB015470
EMBL:AY054499EMBL:AY087641EMBL:AY114631EMBL:CP002688
EMBL:U66593EMBL:U69155EnsemblPlants:AT5G40770EnsemblPlants:AT5G40770.1
entrez:834077GeneID:834077Genevisible:O04331GO:GO:0005730
GO:GO:0005739GO:GO:0005747GO:GO:0005773GO:GO:0005774
GO:GO:0005886GO:GO:0007005GO:GO:0009651GO:GO:0009723
GO:GO:0009733GO:GO:0016020GO:GO:0016021GO:GO:0016049
GO:GO:0048527GO:GO:0051301GO:GO:0071731Gramene:AT5G40770.1
hmmpanther:PTHR23222HOGENOM:HOG000205692InParanoid:O04331IntAct:O04331
InterPro:IPR000163InterPro:IPR001107KEGG:ath:AT5G40770KO:K17080
OMA:IMIRRIEPANTHER:PTHR23222PaxDb:O04331Pfam:O04331
Pfam:PF01145PhylomeDB:O04331PRIDE:O04331PRINTS:PR00679
PRO:PR:O04331ProMEX:O04331ProteinModelPortal:O04331Proteomes:UP000006548
RefSeq:NP_198893.1SMART:SM00244STRING:3702.AT5G40770.1SUPFAM:0050593
SUPFAM:SSF117892TAIR:AT5G40770tair10-symbols:ATPHB3tair10-symbols:PHB3
UniGene:At.6861UniProt:O04331
Coordinates (TAIR10) chr5:-:16315589..16316621
Molecular Weight (calculated) 30401.60 Da
IEP (calculated) 7.89
GRAVY (calculated) -0.01
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)