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AT5G40740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IISZeggNOG:ENOG4110HS1EMBL:AB009052EMBL:AY039971
EMBL:AY079386EMBL:CP002688EnsemblPlants:AT5G40740EnsemblPlants:AT5G40740.1
entrez:834074GeneID:834074Genevisible:Q94BP7GO:GO:0005819
GO:GO:0005874GO:GO:0007067GO:GO:0009524GO:GO:0051011
GO:GO:0051225GO:GO:0051301GO:GO:0070652Gramene:AT5G40740.1
hmmpanther:PTHR16151HOGENOM:HOG000030585InterPro:IPR026797InterPro:IPR028163
iPTMnet:Q94BP7KEGG:ath:AT5G40740ncoils:CoilOMA:SECTEMV
PANTHER:PTHR16151PaxDb:Q94BP7Pfam:PF14661PhylomeDB:Q94BP7
ProteinModelPortal:Q94BP7Proteomes:UP000006548RefSeq:NP_568585.1STRING:3702.AT5G40740.1
TAIR:AT5G40740UniGene:At.7427UniProt:Q94BP7
Coordinates (TAIR10) chr5:-:16302229..16306371
Molecular Weight (calculated) 80939.40 Da
IEP (calculated) 5.02
GRAVY (calculated) -0.44
Length 741 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMDREKERE LELESAMYTN CLLLGLDPNV IGLGASNGTP RVGLFRHSNP KLGEQLLYFI LSSLRGPAQS SKDFDKVWPI FDSAQSRDFR KVVQAIISEL
101: ESQGALPRSN SRVSSLATCC GPRFVELLWQ LSLHALREVH RRTFPADVAS NPLPSSLTDV SFSHAATLLP VTKARIVLER RRFLKNAETA VQRQAMWSNL
201: AHEMTAEFRG LCAEEAYLQQ ELEKLNDLRN KVKQEGEVWD DLVSSSSQNS HLVSKATRLW DSIMARKGQH EVLASGPIED LIAHREHRYR ISGSALLAAM
301: DQSSQVPRAE LLSAHSDDSA SLADDKELSD GSYTNMHDHS LVDSFETASS QASDETLSRV DDRGGKINQT VDVAEVIRRW THALQRIHKQ SLLLAKANDG
401: DGPDILRTAS DGGTSGHVES LAATLTEHQQ HLASFQVLIN QLKEVSPAIQ KSISECTEMV NSLPPTLPPV TRSNGQASSL LQSQGSGRIM EGVSNDVAEL
501: TSTMSNVQLE KVSASPTLKL PQLFSSTPTS SGKGGNGQKR QTMASQVNKM ESLSEKNSTD QALSNARPDN LPTDTSSSFV HNLKKSVREA ALLIPSSAGS
601: SRDSQSDEGS EHYFVPLSAT GFSRFPSETK ALPLRGSRAL TSLSEPSFLE PNVPDSFAPS KYSDIPDTYD DLDSFKDYDN GNGFLSVAGS NSVASDAQQS
701: FYDIDDQVFS PPLLMDSSLL SDAYEDLLAP LSETEAALME H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)