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AT5G40710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.645
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc finger (C2H2 type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G63280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFHMeggNOG:ENOG4111M6JEMBL:AB009052EMBL:BT025033
EMBL:CP002688EnsemblPlants:AT5G40710EnsemblPlants:AT5G40710.1entrez:834071
GeneID:834071GO:GO:0016021GO:GO:0046872Gramene:AT5G40710.1
hmmpanther:PTHR21385hmmpanther:PTHR21385:SF2InterPro:IPR007087KEGG:ath:AT5G40710
OMA:FVEKERYPhylomeDB:Q9FM27PROSITE:PS00028Proteomes:UP000006548
RefSeq:NP_198887.1scanprosite:PS00028TAIR:AT5G40710TMHMM:TMhelix
UniGene:At.43337UniProt:Q9FM27
Coordinates (TAIR10) chr5:+:16295091..16296810
Molecular Weight (calculated) 31894.40 Da
IEP (calculated) 9.51
GRAVY (calculated) -0.49
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRSNSQCPS HWILLCFFIS SQFWGFSLPT SIIQQNLEGF KDPEDGFHEI HCSRERSRVA WKIIQEYLMP YVEKERYQLP STCRVHRDND IYREQEEHKL
101: RSDINEWRCG FCKKAFYEEK YLDKHFDSRH YNLLNASHGK CLSDLCGALH CDLVVDTARL KSKCNPAAAA KNRHLCESLA NSCFPVNKGS SANRLHDFFL
201: RQFCDAHTCS GGSKPLSQKP KKRSIVYIIF SIIVLVVLLL YYSFVYLFRR GLKRRSQDLK RIRHNGLKKK PF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)