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AT5G40610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD-dependent glycerol-3-phosphate dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD-dependent glycerol-3-phosphate dehydrogenase family protein; FUNCTIONS IN: in 9 functions; INVOLVED IN: oxidation reduction, glycerol-3-phosphate metabolic process, glycerol-3-phosphate catabolic process, carbohydrate metabolic process, metabolic process; LOCATED IN: chloroplast, glycerol-3-phosphate dehydrogenase complex, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal (InterPro:IPR011128), NAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR006168), NAD-dependent glycerol-3-phosphate dehydrogenase, eukaryotic (InterPro:IPR017751), NAD(P)-binding domain (InterPro:IPR016040), NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal (InterPro:IPR006109); BEST Arabidopsis thaliana protein match is: NAD-dependent glycerol-3-phosphate dehydrogenase family protein (TAIR:AT2G40690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:1.1.1.8eggNOG:COG0240eggNOG:KOG2711EMBL:AB009052
EMBL:AJ242602EMBL:AY080863EMBL:BT000967EMBL:CP002688
EnsemblPlants:AT5G40610EnsemblPlants:AT5G40610.1entrez:834060Gene3D:1.10.1040.10
Gene3D:3.40.50.720GeneID:834060Genevisible:Q9SCX9GO:GO:0004367
GO:GO:0005975GO:GO:0006650GO:GO:0008654GO:GO:0009331
GO:GO:0009507GO:GO:0046168GO:GO:0051287Gramene:AT5G40610.1
gramene_pathway:1.1.1.8gramene_pathway:PWY-6118hmmpanther:PTHR11728hmmpanther:PTHR11728:SF8
HOGENOM:HOG000246855InParanoid:Q9SCX9InterPro:IPR006109InterPro:IPR006168
InterPro:IPR008927InterPro:IPR011128InterPro:IPR013328InterPro:IPR016040
InterPro:IPR017751KEGG:00564+1.1.1.8KEGG:00564+1.1.1.94KEGG:ath:AT5G40610
KO:K00006OMA:IINNEHEPaxDb:Q9SCX9Pfam:PF01210
Pfam:PF07479Pfam:Q9SCX9PhylomeDB:Q9SCX9PIRSF:PIRSF000114
PRIDE:Q9SCX9PRINTS:PR00077PRO:PR:Q9SCX9PROSITE:PS00957
ProteinModelPortal:Q9SCX9Proteomes:UP000006548Reactome:R-ATH-1483166Reactome:R-ATH-75109
RefSeq:NP_198877.1scanprosite:PS00957SMR:Q9SCX9STRING:3702.AT5G40610.1
SUPFAM:SSF48179SUPFAM:SSF51735TAIR:AT5G40610TIGRfam:TIGR03376
TIGRFAMs:TIGR03376UniGene:At.695UniPathway:UPA00940UniProt:Q9SCX9
Coordinates (TAIR10) chr5:-:16265071..16267258
Molecular Weight (calculated) 43794.00 Da
IEP (calculated) 8.09
GRAVY (calculated) -0.05
Length 400 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFRSFFFSS SIFSLSHSRS PSLSSSRFSS LSAAMSPALE KSRQGNGGCN DDSKSKVTVV GSGNWGSVAA KLIASNALKL PSFHDEVRMW VFEEVLPNGE
101: KLNDVINKTN ENVKYLPGIK LGRNVVADPD LENAVKDANM LVFVTPHQFM DGICKKLDGK ITGDVEAISL VKGMEVKKEG PCMISSLISK QLGINCCVLM
201: GANIANEIAV EKFSEATVGY RGSREIADTW VQLFSTPYFM VTPVHDVEGV ELCGTLKNVV AIAAGFVDGL EMGNNTKAAI MRIGLREMKA LSKLLFPSVK
301: DSTFFESCGV ADVITTCLGG RNRRVAEAFA KSRGKRSFDE LEAEMLQGQK LQGVSTAREV YEVLKHCGWL EMFPLFSTVH QICTGRLQPE AIVQYRENKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)