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AT5G40600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.983
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYAVeggNOG:ENOG410ZFW4EMBL:CP002688EnsemblPlants:AT5G40600
EnsemblPlants:AT5G40600.1entrez:834059GeneID:834059Gramene:AT5G40600.1
InParanoid:F4KIP2InterPro:IPR027353KEGG:ath:AT5G40600ncoils:Coil
OMA:RVASTECPaxDb:F4KIP2Pfam:PF17035Pfscan:PS51525
PRIDE:F4KIP2PROSITE:PS51525ProteinModelPortal:F4KIP2Proteomes:UP000006548
RefSeq:NP_198876.2SMR:F4KIP2STRING:3702.AT5G40600.1TAIR:AT5G40600
UniGene:At.55280UniProt:F4KIP2
Coordinates (TAIR10) chr5:-:16254907..16256765
Molecular Weight (calculated) 36762.30 Da
IEP (calculated) 5.32
GRAVY (calculated) -0.25
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MTIPVPLESL FPLLHRSVNC SFLPGGAILI SGDFSDFIVE QDLFDNVGFE IARLVARLVF FSLSGAEICF CYIPESAMSK RAAEEMTPSL ESNRTGPDFF
101: GYYRAQVEEL LSQEEKIPHH NHVDAKKSSA EIIGAELSDV KQEKLNALLR QCVLNSIPEV DEMQSRVDSM YLMSQLSNKK RSTLPTNAES VIPEDPRCKE
201: VEDDLRLLMK SDPSLVKEIV GKHSSDLLAR LNERQQHLEK LLDNVVTTCR PMSRGEKRDL QKSIKELPAK NLERVAGIIK NHYVALGKEM PDDVFVINME
301: EEDKVLLWRL HYFVVAVQSA RKLAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)